BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488063
Length=1287
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl tran... 1851 0.0
AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl tran... 1123 0.0
> AT5G12210.1 | Symbols: AtRGTB1, RGTB1 | RAB geranylgeranyl transferase
beta subunit 1 | chr5:3947103-3949866 FORWARD LENGTH=1388
Length=1388
Score = 1851 bits (1002), Expect = 0.0
Identities = 1216/1314 (93%), Gaps = 36/1314 (3%)
Strand=Plus/Plus
Query 1 CTAAGGAAGAAGAAGGTTTTGATGTTTTAGTGAAAGGTTAGAtttttttttCCCGATCTT 60
|||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||
Sbjct 51 CTAAGGAAGAAGAAGGTTTTGATG--TTAGTGAAAGGTTAGATTTTTTATT-CCGATCTT 107
Query 61 CTTCAGGCTCCTCGTATCGTAATCTCTCTTCTGGATCCAAGGTGATGAGCTCTACGTCTT 120
|||| |||||| ||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 108 GGTCAGTCTCCTCCAATCGTGATTTCTCTTCTGGATCCAAGCTGATGAGCTCTACGTCTT 167
Query 121 CCTCCCAGATGGGTCAGCTTGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAA 180
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 168 CCTCCCAGATGGTTCAGCTCGTAGCTGACAAGCATGTACGTTACATTCTGATGGCAGAAA 227
Query 181 AGAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCTTACT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 228 AGAAGAAAGAGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCATACT 287
Query 241 GGGGACTCACCACTCTCGACTTACTCGACAAGCTGGGCTGTGTTTCTGAAGATGAAGTCG 300
||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 288 GGGGACTCACCACTCTCGACTTACTTGACAAGCTCGGCTGTGTTTCTGAAGAGGAAGTCA 347
Query 301 TTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAATACTGGACACG 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 348 TTTCATGGCTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAACACTGGACACG 407
Query 361 ATCCACATATTCTATATACACTCAGTGCCGTACAAATCTTGGCCCTCTTTGACAAAATTA 420
|||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 408 ATCCACATATCCTATATACACTCAGTGCTGTACAAATCTTGGCCCTATTTGACAAAATCA 467
Query 421 ACATTCTTGACATTGGGAAAGTATCAGGTTATGTTGCTAAGTTGCAGAACGAAGATGGAT 480
|||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||
Sbjct 468 ACATTCTTGACATTGGGAAAGTGTCAAGTTATGTTGCTAAGTTGCAGAATGAAGATGGAT 527
Query 481 CCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 528 CCTTCTCAGGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCT 587
Query 541 GTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCAGTTGAGTACATTG 600
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 588 GTCTCTCAATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCCGTTAAGTACATTG 647
Query 601 TGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 648 TGAGCTGCAAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAG 707
Query 661 GACAGATTTTCTGCTGTGTGGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATA 720
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 708 GACAAATTTTCTGCTGCGTTGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATA 767
Query 721 AGGACTTACTTGGTTGGTGGTTATGTGAAAGACAAGTAAAGGGTGGGGGCTTAAATGGAC 780
|||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 768 AGGACTCACTTGGTTGGTGGTTATGTGAAAGACAATTAAAGGCTGGGGGCTTAAATGGAC 827
Query 781 GACCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGA 840
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 GTCCTGAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGA 887
Query 841 TAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTTTGGACTGTCAGG 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 888 TAGATAGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTCTGGACTGTCAGG 947
Query 901 ATTTGGAAAACGGAGGCATCTCAGACCGACCTGACGATGCTGTTGATATCTTCCACACCT 960
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 948 ATTTGGACAACGGAGGCATCTCAGACCGACCCGAGGATGCTGTTGATATCTTCCACACCT 1007
Query 961 ACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCGG 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1008 ACTTTGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCAG 1067
Query 1021 CCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGATTGCAATGGG 1080
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1068 CCTATGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGACTGCAATGGG 1127
Query 1081 TAT--GCTCTTAATGGTCAAAC--T----C--------T----ATATGCTTTGTTCATTG 1120
||| | ||||||||||||||| | | | ||||| |||||||||||
Sbjct 1128 TATATGATCTTAATGGTCAAACAATATGGCCGCAAGGCTCTCTATATGATTTGTTCATTG 1187
Query 1121 AACAGTTTACCTAGGCGGTTTTAGAAGTTTTGTATGCTCAAGGAGGAG-ACATTATAAGA 1179
|| | ||||| | |||||||||||||||| |||||||||||||||||| | ||| ||
Sbjct 1188 AATAATTTACTT-GGCGGTTTTAGAAGTTATGTATGCTCAAGGAGGAGGAGATTGCAATT 1246
Query 1180 ACACTTTGCAAA-A--CTCAACAGTCTCGCAATGTTGTATTACTTTGCTACATTTTTGAG 1236
| || || | ||||| | |||| |||||||||| |||| |||||||| |||||
Sbjct 1247 TGGGTATGGGAACAGTCTCAA-A-TCTC--AATGTTGTATAACTT-GCTACATTATTGAG 1301
Query 1237 GTTTCTAATGTAATGGAAATGAAGTTGTGT--C-GCTACACTATATAAATCACA 1287
|||||| |||||||||||| |||||||||| | |||||| |||||||||||||
Sbjct 1302 GTTTCTGATGTAATGGAAACGAAGTTGTGTTGCTGCTACATTATATAAATCACA 1355
> AT3G12070.1 | Symbols: AtRGTB2, RGTB2 | RAB geranylgeranyl transferase
beta subunit 2 | chr3:3845211-3847274 REVERSE LENGTH=1297
Length=1297
Score = 1123 bits (608), Expect = 0.0
Identities = 837/948 (88%), Gaps = 13/948 (1%)
Strand=Plus/Plus
Query 136 AGCTTGTAGCTGACAAGCATGTACGTTACATTC------TGATGGCAGAAAAGAAGAAAG 189
|||| ||||||| ||||||| | |||||||||| |||||||||||||||| ||||
Sbjct 145 AGCTCGTAGCTGGCAAGCATCTTCGTTACATTCTGAATTTGATGGCAGAAAAGAAAAAAG 204
Query 190 AGAGTTTTGAGTCTGTGGTGATGGATCATCTAAGAATGAATGGTGCTTACTGGGGACTCA 249
||||||||||||||||||| ||||||||||| |||||||||||||| || |||||||| |
Sbjct 205 AGAGTTTTGAGTCTGTGGTTATGGATCATCTGAGAATGAATGGTGCATATTGGGGACTAA 264
Query 250 CCACTCTCGAC-TTACTCGACAAGCTGGGCTGTGTTTCTGAAGATGAAGTCGTTTCATGG 308
|||| || | | |||||||||||||| || | |||||| ||||||||||| || ||||||
Sbjct 265 CCACACT-GGCTTTACTCGACAAGCTTGGTTCTGTTTCCGAAGATGAAGTTGTGTCATGG 323
Query 309 CTCATGACTTGCCAGCATGAATCTGGTGGCTTTGCCGGTAATACTGGACACGATCCACAT 368
||||||| ||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct 324 GTCATGACCTGCCAGCATGAGTCTGGTGGCTTTGCCGGTAATACTGGCCATGATCCGCAT 383
Query 369 ATTCTATATACACTCAGTGCCGTACAAATCTTGGCCCTCTTTGACAAAATTAACATTCTT 428
|| | |||||||||||||| |||||||||||||||||||| |||||| | |||||||||
Sbjct 384 GTTTTGTATACACTCAGTGCTGTACAAATCTTGGCCCTCTTCGACAAACTCAACATTCTT 443
Query 429 GACATTGGGAAAGTATCAGGTTATGTTGCTAAGTTGCAGAACGAAGATGGATCCTTCTCA 488
|| ||| ||||| ||| |||| ||||| ||| ||||| ||||||||||||||||||
Sbjct 444 GATGTTGAAAAAGTTTCAAATTATATTGCTGGGTTACAGAATGAAGATGGATCCTTCTCA 503
Query 489 GGAGATATGTGGGGAGAAATAGATACGAGGTTTTCGTACATAGCTATTTGCTGTCTCTCA 548
|||||||| ||||| ||| ||||||| |||||||| ||||||||||| ||||| ||||||
Sbjct 504 GGAGATATATGGGGCGAAGTAGATACAAGGTTTTCTTACATAGCTATATGCTGCCTCTCA 563
Query 549 ATATTGAAATGTCTTGACAAAATCAATGTGGAGAAGGCAGTTGAGTACATTGTGAGCTGC 608
||||| ||||||||||| |||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 564 ATATTAAAATGTCTTGATAAAATCAATGTGAAGAAGGCTGTTGATTACATTGTGAGCTGC 623
Query 609 AAAAACCTGGATGGTGGTTTTGGGTGCACACCTGGAGCAGAGTCCCATGCAGGACAGATT 668
||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||
Sbjct 624 AAAAACCTGGATGGTGGTTTTGGGTGCTCACCTGGAGCGGAGTCTCATGCAGGACAGATT 683
Query 669 TTCTGCTGTGTGGGTGCTCTTGCTATCACTGGGAGTCTCCATCATGTTGATAAGGACTTA 728
||||| ||||||||||||||||||||||| |||| |||||||| ||||||||||||||||
Sbjct 684 TTCTGTTGTGTGGGTGCTCTTGCTATCACCGGGAATCTCCATCGTGTTGATAAGGACTTA 743
Query 729 CTTGGTTGGTGGTTATGTGAAAGACAAG--TAA-AGGGTGGGGGCTTAAATGGACGACCT 785
||||| |||||||||||||||||||||| || || ||| || |||||||||||||||
Sbjct 744 CTTGGATGGTGGTTATGTGAAAGACAAGACTACGAGTCTGGAGGTTTAAATGGACGACCT 803
Query 786 GAGAAACTCGCTGATGTTTGCTATTCTTGGTGGGTCCTATCGAGCCTAATCATGATAGAT 845
||||||||| |||||||||||||||||||||||||| |||| ||| |||||||||| |||
Sbjct 804 GAGAAACTCCCTGATGTTTGCTATTCTTGGTGGGTCTTATCCAGCTTAATCATGATCGAT 863
Query 846 AGAGTTCACTGGATCGACAAAGCAAAGCTTGTCAAGTTCATTTTGGACTGTCAGGATTTG 905
||||||||||||||||| |||||||||||||||||||| || ||||||| |||||| ||
Sbjct 864 AGAGTTCACTGGATCGAGAAAGCAAAGCTTGTCAAGTTTATCTTGGACTCTCAGGACATG 923
Query 906 GAAAACGGAGGCATCTCAGACCGACCT-GACGATGCTGTTGATATCTTCCACACCTACTT 964
|| ||||||||||||||||| |||| | | || |||||||||||||||||||||||||
Sbjct 924 GATAACGGAGGCATCTCAGATAGACCCAG-CTATACTGTTGATATCTTCCACACCTACTT 982
Query 965 TGGAGTTGCGGGGCTTTCCCTCCTTGAGTATCCTGGAGTCAAAGTAATTGATCCGGCCTA 1024
||||||||||||||| || || || |||||||||||||||||| ||||||||| |||||
Sbjct 983 TGGAGTTGCGGGGCTCTCTCTTCTCGAGTATCCTGGAGTCAAAACAATTGATCCTGCCTA 1042
Query 1025 TGCTTTGCCTGTTGATGTCGTCAACCGGATTATATTCACCAAATGATT 1072
||||||||||| ||||| ||||||||||| | ||||||||||||||
Sbjct 1043 CGCTTTGCCTGTCCATGTCATCAACCGGATTCTCTTCACCAAATGATT 1090
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63302887245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5