BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488065
Length=1907
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12220.1 | Symbols: | las1-like family protein | chr5:39501... 2961 0.0
> AT5G12220.1 | Symbols: | las1-like family protein | chr5:3950155-3953085
FORWARD LENGTH=1970
Length=1970
Score = 2961 bits (1603), Expect = 0.0
Identities = 1801/1897 (95%), Gaps = 11/1897 (1%)
Strand=Plus/Plus
Query 1 AAAACCCTAAAAGCTTACGA---GACTCATCAATGGAGGCGCTAGCGGGAATTGAAGCAG 57
|||||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 32 AAAACCCTAAAAGCTTTCGAGCCGACTCTTCAATGGAGGCGCTAGCGGGAATTGAAGCAG 91
Query 58 ACATCGAATCGTATTTCGGAGAGCAGGATCAACAGAAATCGTCATCGGACGGCTGCAAAC 117
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 92 ACATCGAATCGTATTTCGGAGAGCAGGATCAACAGAAATCGTCACCGGACGGCTGCAAAC 151
Query 118 AGGTCCCTTGGCTGAGTTGGGAAGAGTGGGACTCAGTGAGAGAGTCTCTCTTCTCTTCAT 177
||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 152 AGGTCCCGTGGCTGAGCTGGGAAGAGTGGGACTCTGTGAGAGAGTCTCTCTTCTCTTCTT 211
Query 178 CTCTTGATAGAATCGCTTCTGCATTGGAAAGGGTTGCAACATGGCGAAGTCGAGGATCTC 237
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 212 CTCCGGATAGAATCGCTTCTGCATTGGAAAGGGTTGCAACATGGCGAAGTAGAGGATCTC 271
Query 238 TTCCAGCACCTGTGGATGTTACTTGTTCCCTTATTGAAATTCAGCTCAAAGATGGCTTTA 297
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 272 TTCCAGCGCCTGTGGATGTTACTTGTTCCCTTATTGAAATTCAACTCAAAGATGGCTTTA 331
Query 298 TTCCGAGAGAGGAACAATCAGCAGATGCATTATATTCAGAGCATTTACTGCAGATGCTTT 357
||||||| ||| ||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 332 TTCCGAGGGAGAAACAATCAGCAGATGCATTGTATTCAGAGCATTTACTGCAGATGCTAT 391
Query 358 ATTGCATGGGTATACTCAGGCTTGTGAACTGTGTCATAGAAAAGACAAGGAGGAGAGAAG 417
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 392 ATTGCATGGGAATACTCAGGCTTGTGAACTGTGTCATAGAAAAGACAAGGAGGAGAGAAG 451
Query 418 ATGTTTCAATTGCGGATGCAGCTAGAGCAATCGGTATCCCACGTAAATTAATCGATCTTC 477
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACGTTTCAATTGCGGATGCTGCTAGAGCAATCGGTATCCCACGTAAATTAATCGATCTTC 511
Query 478 GTCATGAGGGTTCTCACCGTGAGCTCCCTGCACTCTCGGTGCTTCGGGATGCTGCAGATG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 512 GTCATGAGGGTTCTCACCGTGAGCTCCCTGCACTCTCGGTGCTTCGGGATGCTGCAGATG 571
Query 538 AGGCACTTGAATGGTTGAAATCTTATTATTGGGAGCCACAGAAGTATCAAATTCCCTTAA 597
|||| ||||||||||||||||| ||||||||||||| ||| ||||||||||| |||||||
Sbjct 572 AGGCTCTTGAATGGTTGAAATCGTATTATTGGGAGCAACAAAAGTATCAAATCCCCTTAA 631
Query 598 AGAGAGATGGAACGGCTAGCATCAGAAGAGAAGTCAAATCCAAACTCAGGAAACTTGCTT 657
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 AGAGAGATGGAACAGCTAGCATCAGAAGAGAAGTCAAATCCAAACTCAGGAAACTTGCTT 691
Query 658 TCTCCTTGCAGCTTAAGCATAATCCTCAATTTGACTCCCCTTTGGTCAAAGAAAACTGTT 717
||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 692 TCTCCTTGCAGCTGAAGCGTAATCCTCAATTTGACTCCCCTTTGGTCAAAGAAAAATGTT 751
Query 718 CTAATAAAAGGATAAGGAAGATCGTAAGTAGCCTTGTTGAGTTATACCCTTCTTTCTCCG 777
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 752 CTAATAAAAGGATAAGGAAGATTGTAAGCAGCCTTGTTGAGTTATACCCTTCTTTCTCCG 811
Query 778 CAGAAATTTCATCTGTGCTCCTTGAATTCTTACTCAAGGCCTTGGATTCTTCAAAGTCGA 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 CAGAAATTTCATCTGTGCTCCTTGAATTCTTACTCAAGGCCTTGGATTCTTCAAAGTCGA 871
Query 838 CAGATCTTCAGAATAAGCCTGGGAAAGATTTCAGAGG-CTTCCTAGCA-GAATGGAAACC 895
||||||||||||||||| ||||| |||||||||| || ||| |||| | |||||||||||
Sbjct 872 CAGATCTTCAGAATAAGGCTGGGCAAGATTTCAG-GGTCTTTCTAG-ATGAATGGAAACC 929
Query 896 TGTAATCATGGAGCTCTCAAATAGAGAACCCGAGTTGCTTTTGACTCTACTCAAGGAAGT 955
|||||| ||||| ||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 930 TGTAATAATGGAACTCTCAAATAGAGAACCTGAGTTACTTTTGACTCTACTCAAGGAAGT 989
Query 956 TCTTGATATGATCCAATATAATGAACGGAGAAGATATGAAACCGAAAAGCAAGCGGAAGA 1015
||||||||||||||| ||||||||||||||||| ||||||||||||||| || ||||||
Sbjct 990 CCTTGATATGATCCAAAATAATGAACGGAGAAGACATGAAACCGAAAAGCCAGTGGAAGA 1049
Query 1016 GGTTTCTCAAGTTGAGCAGGTCCCTTTCTTGTTTGCATGGCTTGTGAGTCTTCTCAATGG 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1050 GGTTTCTCAAGTTGAGCAGGTCCCTTTCTTGTTTGCATGGCTTGTGAGTCTTCTCAATGG 1109
Query 1076 GTCAAAGCATTTTCAAAGAAACAGTTCTGTAGAAGTGAAACCTCCAAGCATTTTCCTTAT 1135
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1110 ATCAAAGCATTTTCAGAGAAACAGTTCTCTAGAAGTGAAACCTCCAAGCATTTTCCTTAT 1169
Query 1136 GGAACTTATACGTAGATGTCTTCTCTTGGGAGCCTTAGGAAACGAGCCGGTTCTGAAATC 1195
|||||||||||||||||||||| ||||||||||||||||| | |||| |||| |||||||
Sbjct 1170 GGAACTTATACGTAGATGTCTTGTCTTGGGAGCCTTAGGATATGAGCTGGTTTTGAAATC 1229
Query 1196 AGCATTCCTACTCGCAGAGATTGTGGGAGGCCGTGTTTTAAAGGAGAAGCTCATAAAACT 1255
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1230 AGCATTTCTACTCGCAGAGATTGTGGGAGGCCGTGTCTTAAAGGAGAAGCTCATAAAACT 1289
Query 1256 CCCTCTCATGCATAAAGGCTCTGCAATTGTTCCATTGGAACAGAGTTCTACTCTTGTAAC 1315
||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1290 TCCTCTTATGCATAAAAGCTCTGCAATTGTTCCATTGAAACAGAGTTCTACTCTTGTAAC 1349
Query 1316 AGCTCCTACAACGCTCCTTGAACAAGAGAAGAATCTCGGTAATGCAGGCAAGAGACTTGA 1375
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1350 AGCTAGTACAACGCTCCTTGAGCAAGAGAAGAATCTCGGTAATGCAGGCAAGAGACTTGA 1409
Query 1376 GTTCGTCAAACTTCAACTCTCAAAGAAAAAAGGTATCGACACAGACAAAACCGGTAACAG 1435
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1410 GTTCGTCAAACTTCAACTCTCAAAGAAGAAAGGTATTGACACAGACAAAACCGGTAACAG 1469
Query 1436 ATGGAGAAAGGCAAAAACATGGAGCCCTTGCCCAATTGGCATGTTGCCTCGGATCATTGG 1495
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1470 ATGGAGAAAGGCAAAAACATGGAGCCCTTGTCCAATTGGTATGTTGCCTCGGATCATTGG 1529
Query 1496 ATCTTCTGGACGTTTACCTCTTCTTGACTATCACAATGCTCAGAGCATCTCAAAACAAGC 1555
|||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||
Sbjct 1530 ATCTTCTGGACGTTTACCTCTTCTTGACAATCAGAATGCTAAGAGCATCTCAAAACAAGC 1589
Query 1556 ACAAGGTAACAACAATGCCAAGAGAGGAACTGAGTGTAATAGAAAGCAATTGGAGAAATC 1615
|||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1590 ACAAGGTAACAACAATGCGAAGAGAGGAGCTGAGTGTAATAGAAATCAATTGGAGAAATC 1649
Query 1616 ACCATGCAAGCGAGCAAGGAAGAGTGCAGAAGATTCTGACA-CAAATGATGTGACATTGG 1674
|||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||
Sbjct 1650 GCCATGCAAGCGAGCAAGGAAGAGTGCAGGAGATTCTGA-ATCAAATGATGTGACATTGG 1708
Query 1675 AAGCATACGAGGAAGAAGCTGAGATGGAAATAGAACATGCATATGAGGAAACTGAAGCTG 1734
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1709 AATCATACGAGGAAGAAGCTGAGATGGAAATAGAACATGCATATGAGGAAACTGAAACTG 1768
Query 1735 TAGCAGAAGAGAATCTGATGTGGAATGATAAAGAGGAAAGCAGAAGCTGTCTTATGATAG 1794
||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct 1769 TAGCAGAAGAGAATCTGATGTGGAATGATGAAGAGGAAAGTAGAAGCTGCCTTATGATAG 1828
Query 1795 ATGGTGAATGGAAAAGAGTCAATGAAGGAGAACTATCGGGGATGGCTTCGAAAATTACAA 1854
||||||||||||||||||| ||||| |||||||| |||||||||||||| | ||||||
Sbjct 1829 ATGGTGAATGGAAAAGAGTAAATGATGGAGAACTCTCGGGGATGGCTTCTAGTGTTACAA 1888
Query 1855 TTTGTGTCTGAGATTTCTG-CAGATGTAACCATATAA 1890
||||||| ||||||||| | ||||||||| |||||||
Sbjct 1889 TTTGTGTTTGAGATTTC-GACAGATGTAATCATATAA 1924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94427225145
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5