BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488066
Length=1274
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12230.1 | Symbols: MED19A | MED19A; BEST Arabidopsis thalia... 1652 0.0
AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 442 4e-123
> AT5G12230.1 | Symbols: MED19A | MED19A; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G19480.2); Has
1807 Blast hits to 1807 proteins in 277 species: Archae -
0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:3953148-3956185 REVERSE LENGTH=1326
Length=1326
Score = 1652 bits (894), Expect = 0.0
Identities = 1028/1089 (94%), Gaps = 24/1089 (2%)
Strand=Plus/Plus
Query 200 AACGAGATCT-GGCTTCTCG-AAGAAACGTG--ATACAT--A-T--G-CAGTGATCATGC 249
|||||||||| ||||| ||| |||||||||| ||| || | | | ||||||||||||
Sbjct 248 AACGAGATCTGGGCTTGTCGAAAGAAACGTGATATATATGCAGTGAGCCAGTGATCATGC 307
Query 250 -AAAGAATATTCAGAGTGCGATAGAGAAGATGGAACCTGAGCGTTTAAAATTTGGAGGTC 308
|||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 308 AAAAGAA-ATTCAGAGTGCGATAGAGAAGATGGAGCCTGAACGTTTAAAATTTGGAGGTC 366
Query 309 CAAGAGAGTTGTGTGGTGCTGCGGATCTTATATCTCAATTCAAACTAGTGCAACACCATG 368
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 CAAGAGAGTTGTGCGGTGCTGCGGATCTTATATCTCAATTCAAACTAGTGCAACACCATG 426
Query 369 AATTCTTTTGCAAGAAATCCCTTCCCGTCTCTCTATCAGATTCCCATTATCTTCATAATG 428
||||||||||||||||||| ||||| || ||| |||||||||||||||||||||||||||
Sbjct 427 AATTCTTTTGCAAGAAATCTCTTCCTGTTTCTTTATCAGATTCCCATTATCTTCATAATG 486
Query 429 TGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAATGCAATTAGATCAGCTTATTCAGA 488
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 487 TGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAATGCAATTAGATCAGCTTATTGAGA 546
Query 489 GCATATCACAGAGCCGGGAGACTACTGTTCGCATCCAACCTTTTGATATAGATGAGCTTA 548
|||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 547 GCATATCACAGAGCCGGGAGACTAATATTCGCATCCAGCCTTTTGATATAGATGAGCTTC 606
Query 549 AGGAATCTTTCCAACTAAATGATATGACTCCTGTTGAACTACCTCCAGCAGAGAAGGGAG 608
|||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 607 AGGAGTCTTTCCAACTAAATGATATGACTCCTGTTGAATTACCCCCAGCAGAGAAGGGAG 666
Query 609 CTCCTACAATTCCGTCTAAGTCAAAAAGTGAGTCGAAAGATAAGGACAGGAAGCATAAGA 668
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 667 CTCCTACAATTCCGTCTAAGTCAAAAAGTGAGTCGAAAGATAGGGACAGGAAACATAAGA 726
Query 669 AACACAGGGACAGGGATAAGGACaaagatagagagcataagaagcataaacacaagcata 728
|||||| |||||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 727 AACACAAGGACAGGGATAAAGACAAAGATAGAGAGCATAAGAAGCACAAGCACAAACATA 786
Query 729 aagatagaagcaaagataaagataaagacaagGACCGAGACAGAAAGAAGGACAAAAATG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 787 AAGATAGAAGCAAAGATAAAGATAAAGACAAGGACCGAGACAGAAAGAAGGACAAAAATG 846
Query 789 GCCACCATGATTCGGGTGATCATTCTAAGAAACATCATGATAAGAAAAGGAAACACGATG 848
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GCCACCATGATTCGGGTGATCATTCTAAGAAACATCATGATAAGAAAAGGAAACACGATG 906
Query 849 GAGATGAAGATCTTAATGACGTTCAGAGGCACaaaaaaaaCAAGCATAAAAGCTCAAAGC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 907 GAGATGAAGATCTTAATGACGTTCAGAGGCACAAAAAAAACAAGCATAAAAGCTCAAAGC 966
Query 909 TTGATGAGGTGGGTGCAATAAGGGTTGCTGGCTAAAAAAGTTGTAGACATTCCAATTTTG 968
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 967 TTGATGAGGTGGGTGCAATAAGGGTTGCTGGCTAAAAAAGTTGTAGACATTCCAATTTTG 1026
Query 969 TATTCTGCACTCGAGTAAGTGTCATGGAGAGGTTTAGAAGCACTTTTCAACTCACTGTAG 1028
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1027 TATTCTGCACTCGAGTAGGTGTCATGGAGAC-TTTAGAAGCACTTTTCAACTCACTGTAG 1085
Query 1029 ACAGCTTATTAGGTTAAAAGCCCAAAATGGTGAATTCATTCCTTGAAGAAGAAAGGGGAA 1088
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1086 ACAGCTTATTAGGTTAAAAGCCCAAACTGGTGAATTCATTCCTTGAAGAAGAAAGGGGAA 1145
Query 1089 ATTTGTGAGAATGGAAGAAGAAGAATT-AGTATCATAATTGATTTGGTGTCAGATTTGTA 1147
|||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1146 ATTTGTGA-AATG-AAGAAGAAGAATTTAGTATCATAATTGATTTGGTGTCAGATTTGTA 1203
Query 1148 ACATTTTGGGCTTGGGGTGTTTTCTTCCATCTCTTCTCTGTCTATAAAATCAATACTACT 1207
||||||| ||||||||||| | ||||||||||| |||||||||| | ||||||| ||
Sbjct 1204 ACATTTTT--CTTGGGGTGTTCTATTCCATCTCTTTTCTGTCTATATACTCAATACAACA 1261
Query 1208 CACAAT-GTTACTGTTCATGTATAATAATTTATTCTT-CCAATTGATGTTTGTTGAAAAA 1265
|| ||| |||||| |||||||||||||||||| ||| |||||||||||| |||||||||
Sbjct 1262 CA-AATCGTTACTATTCATGTATAATAATTTA--CTTACCAATTGATGTT-GTTGAAAAA 1317
Query 1266 GGAACTGTC 1274
| |||||||
Sbjct 1318 GTAACTGTC 1326
> AT5G19480.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G12230.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:6571501-6573453 FORWARD LENGTH=1072
Length=1072
Score = 442 bits (239), Expect = 4e-123
Identities = 432/523 (83%), Gaps = 22/523 (4%)
Strand=Plus/Plus
Query 287 GAGCGTTTAAAATTTGGAGGTCCAAGAGAGTTGTGTGGTGCTGC-GGATCTTATATCTCA 345
||||| || || ||||||||||| ||||| ||| ||||||| | ||||||||| | ||
Sbjct 234 GAGCG-TT-AAGTTTGGAGGTCCTAGAGAATTGGGTGGTGC-ACTAGATCTTATAACACA 290
Query 346 ATTCAAACTAG-TGCAACACCATGAATTCTTTTGCAAGAAATCCCTTCCCGTCTCTCTAT 404
|| | || | | ||| ||||||||||||||||||||||| ||| ||||| | || || |
Sbjct 291 ATAC-AAGTTGTTGCCACACCATGAATTCTTTTGCAAGAGATCACTTCCAGAGTCACTGT 349
Query 405 CAGATTCCCATTATCTTCATAATGTGGTTGGGGACACAGAGATCAGAAAAGGAGAAGGAA 464
||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 350 CAGATGCTCATTATCTTCATAATTTGGTTGGAGACACAGAGATTAGAAAAGGAGAAGGAA 409
Query 465 TGCAATTAGATCAGCTTATTCAGA--GCATATCAC--AG-AGCCGGGAGACTACTGTTCG 519
||||||||||||||||||||| | |||| ||| || ||||| || || | || |||
Sbjct 410 TGCAATTAGATCAGCTTATTCCTAATGCAT--CACTTAGTAGCCGAGATACGAATGCTCG 467
Query 520 CATCCAACCTTTTGATATAGATGAGCTTAAGGAATCTTTCCAACTAAATGATAT-GACTC 578
|||||||||||||| | | ||||| |||||||| |||| | || ||||||| | |||
Sbjct 468 CATCCAACCTTTTGTTCTTGATGAACTTAAGGAGGCTTTTGAGCTTAATGATACAG-CTC 526
Query 579 CTGTTGAACTACCTCCAGCAGAGAAGGGAGCTCCTACAATTCCGTCTAAGTCAAAAAGTG 638
|||||||| | |||||||||||||||||||||||||| | | || || ||||||||||
Sbjct 527 CTGTTGAATTGCCTCCAGCAGAGAAGGGAGCTCCTACCACTGTATCAAAATCAAAAAGTG 586
Query 639 AGTCGAAAGATAAGGACAGGAAGCATAAGAAA-CACAGGGACAGGGATAAGGACaaagat 697
|||| ||||||||||| ||||| |||| |||| || | |||| | | | ||| ||||||
Sbjct 587 AGTCAAAAGATAAGGATAGGAAACATA-GAAAACATAAAGACAAG-A-A-GGAGAAAGAT 642
Query 698 agagagcataagaagcataaacacaagcataaagatagaagcaaagataaagataaagac 757
|| || ||||||||||| || ||||||||||||||||| | ||||||||| |||||||||
Sbjct 643 AGGGAACATAAGAAGCACAAGCACAAGCATAAAGATAGGATCAAAGATAAGGATAAAGAC 702
Query 758 aagGACCGAGACAGAAAGAAGGACAAAAA-TGGCCACCATGAT 799
||||| ||||||| ||||||||| ||||| ||| |||||||||
Sbjct 703 AAGGATCGAGACAAAAAGAAGGA-AAAAAGTGGACACCATGAT 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62650280160
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5