BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488073
Length=2102
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12290.1 | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974171-... 3349 0.0
> AT5G12290.1 | Symbols: DGS1 | dgd1 suppressor 1 | chr5:3974171-3978160
REVERSE LENGTH=2106
Length=2106
Score = 3349 bits (1813), Expect = 0.0
Identities = 2009/2104 (95%), Gaps = 11/2104 (1%)
Strand=Plus/Plus
Query 1 ACCGACATTAAGGGCACTAGCTCCTCCGTCTCCGGTCATAAACCCGGCCAGAGGTGAACT 60
|||||| |||||||||||| | ||||||||||||||||||||||||| || ||||||||
Sbjct 12 ACCGACGTTAAGGGCACTAACGACTCCGTCTCCGGTCATAAACCCGGCGAGTGGTGAACT 71
Query 61 GAGAAAATTGATTGTCGACTTCAATGGATTCTCAGCCTCCGGCTAACGAGTCAATCCCGT 120
|||||||||||| | ||||| |||||||||| || ||||||| ||||||||||| |||||
Sbjct 72 GAGAAAATTGATAGCCGACTACAATGGATTCGCAACCTCCGGTTAACGAGTCAACCCCGT 131
Query 121 CGACGGCGCTGTCAAACGTCGGAGAGCTAGTTCCTTTTTATTCCAGTTACCTTTGGAATC 180
||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||
Sbjct 132 CGACGGCGCTGTCAAACTTCGGAGAGCTAGTTCCATTTTATTCGAGTTACCTTTGGAATC 191
Query 181 GCCTTGCTTCCTTGTTGCCTACTTCCAATTCCATTTTTCTCGGGAAAATCTCCAATCTCT 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 192 GCCTTGCTTCCTTGTTGCCTACTTCCAAACCCATTTTTCTCGGGAAAATCTCCAATCTCT 251
Query 241 ATCGCCAAACAGTTTCGAGAAAACGAAGTATTTCTTTTCCTCTTCCTCTACCCTCCGATT 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 252 ATCGCCAAACAGTTTCGAGAAAACGAAGTATTTCATTTCCTCTTCCTCTACCCTCCGATT 311
Query 301 TCCCAAATTCTTCTACAATTACAAGCAATGTCTCTGCGGATACAGCTAGAATTCATGGTG 360
|||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 312 TCCCAAGTTCTTCTACAATTACAAGCAATGTCTCTGCGGATACAGCTAGGATTCATGGTG 371
Query 361 TTTTGGAGGAAATTATGGCTGACGTTCTCTCGAATTTGCATGATATCCAGAAAAGTTTAG 420
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 372 TGTTGGAGGAAATTATGGCTGACGTTCTCTCGAATTTGCATGATATTCAGAAAAGTTTAG 431
Query 421 ATTTTTGGCGATCTAGAGCTGAGGGTTCCAATGCACGAAAAGCTTACTTCATGATTTTTG 480
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 432 ATTTTTGGCGATCTAGAGCTGAGGGTTCCAATGCTCGAAAAGCGTACTTCATGATTTTTG 491
Query 481 AGAGAGGACCAACAGCTTTTGTGAACGAGAGTACGAAGTTCGTGAGCAAAAGTTTCAGTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 492 AGAGAGGACCAACAGCTTTTGTGAACGAGAGTACGAAGTTCGTGAGCAAAAGTCTCAGTG 551
Query 541 AGGATTCTGCGATGCAGCATCTTTGTCAGTCATCTTCATCTCACATGACGGAGAGGATGC 600
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 552 AGGATTCTGCGATGCAGCATCTTTGTCAGTCATCTTCGTCTCACATGACAGAGAGGATGC 611
Query 601 GGGTCTTGGTGGAGTTAAGATCTGCACTCGCTTCCTTTCTTGCTCAGCTTTATGTTGAAT 660
||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |
Sbjct 612 GGGTCTTGGTGGAGTTAAGATCTGCACTCGCGTCCTTTATTGCCCAGCTTTATGTTGAGT 671
Query 661 TGGATAAACGTGGAGAGGATCTTGTGAAGAATCCAGAAAAGTCACTGCCATCATTGTTGG 720
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 672 TGGATAAACGTGGAGAGGATCTTGTGAAGATTCCAGAAAAGGCACTGCCATCATTGTTGG 731
Query 721 CTGTTATCAATGGATTGTTTTCGAACCTGGAGGGATCTTTCACCCATTTGCATGCTGAGC 780
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 732 CTGTTATCAATGGATTGTTTTCGAACCTGGAGGGATCTTTCAGCCATTTGCATGCTGTGC 791
Query 781 GTGAGTGTGATTCTTCTGTTGATGGAAGTTACCCAATGCCTCTTGTATTTGATCGACTGC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 792 GTGAGTGTGATTCTTCTGTTGATGGAAGTTACCCAATGCCTCTTGTATTTGATCGACTGC 851
Query 841 CTGAAGTTAATGAAGAAGGATCCCAGTGGACTGATTGTGAACTTACAGATGCAATCAACC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 CTGAAGTTAATGAAGAAGGATCCCAGTGGACTGATTGTGAACTTACAGATGCAATCAACC 911
Query 901 TGGCGCATAAGAATTTGGAAAAACTTAACTCATATTTATCAGTTATGGTAGGGAAACATC 960
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 TGGTTCATAAAAATTTGGAAAAACTTAACTCATATTTATCAGTTATGGTAGGGAAACATC 971
Query 961 GGAAGCCAAGGAGGATGACCCTGTACTGGGTCCGGTATACGTGTGGTGCAGTTGGGCTCT 1020
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 972 GGAAGCCAAGGAGGATGACCCTGTACTGGGTCCGGTATACATGTGGTGCAGTTGGGCTCT 1031
Query 1021 CTGTTTTCTCTATATGGCTTCTACGTCATAGCAGTTTGATGGGAAGTTCGGATATCGAGA 1080
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1032 CTGTTTTCTCTATATGGCTACTACGTCATAGTAGTTTGATGGGAAGTTCGGATATAGAGA 1091
Query 1081 ATTGGGTTCATGATGCAAAAGAAGCAACAATGAGCTTCTTTAGTGATCATGTTGAGCAAC 1140
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1092 ATTGGGTTCATGATGCAAAAGAAGCAACGATGAGCTTCTTTAGTGATCATGTTGAGCAAC 1151
Query 1141 CGCTGCTTTCCATTCGGGATGAGCTTTTTGATACTTTCCGGAAAAGGCACAAGGGTGTTA 1200
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1152 CGCTGCTTTCCATTCGCGATGAGCTTTTTGATACTTTTCGGAAAAGGCACAAGGGTGTTA 1211
Query 1201 TGGAAACTGAAGAAGTGCAGCTGACGCAAGATTCACTGCATAGAATGCTTCGGAATTTCT 1260
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1212 TGGAAACTGAAGAAGTGCAGCTGACGCAAGATTCACTCCACAGAATGCTTCGGAATTTCT 1271
Query 1261 GCGAGCAGGCTACACGTGAAAAGGTCCCGGATAATGCATCTGATCAGGAGATGCTTGAGG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1272 GCGAGCAGGCTACACGTGAAAAGGTCCCGGATAATGCATCTGATCAGGAGATGCTCGAGG 1331
Query 1321 TTGTTATGAATCGGTATGAAAAGGAACTTGTGCATCCTATTCACAACCTCCTTAGCGGAG 1380
||||||||||| |||||||||| ||||||||||| |||||||||||||||||||| ||||
Sbjct 1332 TTGTTATGAATAGGTATGAAAAAGAACTTGTGCACCCTATTCACAACCTCCTTAGTGGAG 1391
Query 1381 AGCTTGCCCGTGGTTTGCTTATTCAGGTCCAAAAGCTTAAACTGGATATAGAAACAGCGA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 AGCTTGCCCGTGGTTTGCTTATTCAGGTCCAAAAGCTTAAACTGGATATAGAAACAGCGA 1451
Query 1441 TGCTTGAACTGGATCAGATACTCCGTGCAAACGAAATAAATTTTGCCATTCTGGCCGCAT 1500
||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1452 TGCTTGAACTGGATCAGATACTCCGTGCAAATGAAATAAACTTTGCCATTCTGGCTGCAT 1511
Query 1501 TACCTGCATTCTTTCTTAGCATTGTTATGCTCACAGTGCTTCGGACCTGGCTTAAAAAGG 1560
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1512 TACCTGCATTCTTTCTCAGCATTGTTATGCTTACAGTGCTTCGGACCTGGCTTAAAAAGG 1571
Query 1561 ATAGCAAAGCTCAAGGACGAGGAAGGATTGCTCGTATTCACAGGAGACTACTAGTCGTTG 1620
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1572 ATAGCAAAGCTCAAGGACGAGGAAGAATTGCTCGTATTCACAGGAGACTACTTGTCGTTG 1631
Query 1621 AAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGGACG 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1632 AAATTGAAAAGAGAATTATGCAGTATCAGAGCTACATTGAACAAGGACGTGATAAGGACG 1691
Query 1681 CAGAAACCGTATTTGGCTTGCTAATATACAGCCTGGAACGTTTGTATCGAGTTGTTGAGA 1740
||||||| |||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1692 CAGAAACTGTATTTGGTTTGCTAATATACAGCCTTGAACGTTTGTACCGAGTTGTTGAGA 1751
Query 1741 AACCTGCAAGAGCAACTGACGAGTGGGATCTAGTGAAACAAGATCTGATCGAGTTAGGAA 1800
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1752 AACCTGCAAGAGCAACCGACGAGTGGGATTTAGTGAAACAAGATCTGATCGAGTTAGGAA 1811
Query 1801 GGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTAACGGTTTATG 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 GGCCACAGCAGCAAACATCATACAAGCTAACAGTGACACAACGACTAGTAACGGTTTATG 1871
Query 1861 ACTGCTTGCTTCCCACTCTCAAGCGACAATAACTCATCTCGGGTTT-TTAATCTGCCTTA 1919
||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| | |||
Sbjct 1872 ACTGCTTGCTTCCCACTCTGAAGCGACAATAACTCATCTCGG-TTTCTTAATCTACTTTA 1930
Query 1920 TGAAATGCCGATTTTATTCAATCATTCCTCCAGAAATACTTGCTTGAGGCCCACTTTAGA 1979
|||||| || ||| |||||||||||||||||| |||| ||||||||||| |||||||
Sbjct 1931 TGAAATCCCAATTGTATTCAATCATTCCTCCAAAAATGCTTGCTTGAGGGCCACTTT--- 1987
Query 1980 GTTTTTGGTACCAAGCCAAAACCTTTTTT-CCTTGAAATGGTAAAACAAAGTTACACATA 2038
| ||||| ||||||||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct 1988 -T----GGTACTAAGCCAAAACCTTTTTTTCCTTGAAATGGTATAACAAGGCTACACATA 2042
Query 2039 GGAGATAGTTTTGAAATTCATGATCTGTGCTGCAATATAAGATATCAAAACCTGTTTTGT 2098
| |||||||||||||||||||||||| || |||||| |||||||||||||||| ||||||
Sbjct 2043 GAAGATAGTTTTGAAATTCATGATCTATGTTGCAATTTAAGATATCAAAACCTATTTTGT 2102
Query 2099 GGTC 2102
||||
Sbjct 2103 GGTC 2106
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104216331420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5