BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488074
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12300.1 | Symbols: | Calcium-dependent lipid-binding (CaLB... 2036 0.0
> AT5G12300.1 | Symbols: | Calcium-dependent lipid-binding (CaLB
domain) family protein | chr5:3978313-3979795 REVERSE LENGTH=1483
Length=1483
Score = 2036 bits (1102), Expect = 0.0
Identities = 1296/1382 (94%), Gaps = 43/1382 (3%)
Strand=Plus/Plus
Query 1 AAAGCTAAAGCTACTCTTGCTTCACTAACACTTCTCTTTCTCTCTTGACTTCCCTTTGAG 60
||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 1 AAAGCAAAAGCTACTCTTGCTTCATTAACACTTCTCTTTCTCTCATGACTTCCCTTTGAG 60
Query 61 GTCATGCTAC--TGTTCAGCTTCAAACTCATTTTAAACGTTAAACCATCTAC-GCTTTAT 117
|| ||| ||| |||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct 61 GTTATGTTACTGTGTTCAGCTTCAGACTCATTTTAAACGTTAAACCATCTACAGCTTTAT 120
Query 118 CGTGGTTCTCTCTTTCTTTG---A------------------TATGGAATCTCTGAAACA 156
| |||||||||||||||||| | ||||||||||||||||||
Sbjct 121 CTTGGTTCTCTCTTTCTTTGATAATTTCTCTGTTTTTTCTTCTATGGAATCTCTGAAACA 180
Query 157 AG---C-T-T-CTTCTGGGTTCTGCTACCATCAAGGCTTCTCAGGTGTTCTCCAAGTGTT 210
|| | | | ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 AGCTTCTTCTGCTTCTGGGTTCTGCTACCACCAAGGCTTCTCAGGTGTTCTCCAAGTGTA 240
Query 211 TGTTCACAACGCAAGAAACATCCACAACATCTGTATCTACGATAACCAAGACGTCTACGC 270
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 241 TGTTCACAACGCAAGAAACATCAACAACATCTGCATCTACGATAACCAAGACGTCTACGC 300
Query 271 CAAATTCTCTCTCACATACAATCCTGACGATACCATCTCCACTAGAATCATCCACAGAGC 330
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 301 CAAATTCTCTCTCACATACAATCCTGACGATACCATCTCCACCAGAATCATCCATAGAGC 360
Query 331 AGGCAAAAACCCTGAATTCAACCAGAAGCTTATGATCGATGTGACTCAGATCGATGCCCA 390
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 361 TGGCAAAAACCCTGAATTCAACCAGAAGCTTATGATCGATGTAACTCAGATCGATGCTCA 420
Query 391 TGCTGCAGTTCTCAAATGTGAGATCTGGATGATGAGCAGAGCCAGACATTACATGGAAGA 450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCTGCAGTTCTCAAATGTGAGATCTGGATGATGAGCAGAGCCAGACATTACATGGAAGA 480
Query 451 TCAGCTTCTTGGTTTCGCTCTTGTCCCAATCTCAGACATCATAGGTCAAGACAGTGTAAC 510
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCAGCTTCTTGGTTTCGCTCTTGTCCCAATCTCAGACATCATAGGTCAAGACAGTGTAAC 540
Query 511 TCAAGACTACAGTCTTTCCTCAACTGATCTCTTCCATTCCCCTGCTGGTACCGTGAAGCT 570
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCAAGACTACAGTCTCTCCTCCACTGATCTCTTCCATTCCCCTGCTGGTACCGTGAAGCT 600
Query 571 CACGCTTTCCATTGTTAACCCTTCCTCTACTTCTTCATCTAATCCCAAGATTAACACCAC 630
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 601 CACGCTTTCCATTGTTAACCCTTCTTCTACTTCTTCATCTAATCCCAAGATTAACACCAC 660
Query 631 GTCGATTTCTTCCGAGGTCGTGTTGCTTGACCCACAGGTCTCTGAAACAGTAGATTACAC 690
|||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 661 TTCGATTTCTTCCGAGGTCGTGTTGCTTGACCCTCAAGTCTCTGAAACAGTAGATTACAC 720
Query 691 GAGGATCGAGTTCCCTGACATCAATGTTGTTAACGAGAACAAACAGATGGTTACAGAGTA 750
|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 721 GAGGATTGAGTTCCCTGACATCAATGTTGCTAACGAGAACAAACAGATGGTTACAGAGTA 780
Query 751 CTTCAATGAATCCGGAACCGCTTCTTTTCTCTGTCTAGGCTCAACACATGGACCAGAAAC 810
|||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 781 CTTCAATGAATCCGGAACCGGTTCATTTCTCTGTCTCGGCTCAACACATGGACCAGAAAC 840
Query 811 GGACATAACAATGGTGTGCTCGGAAGAAAAAGAGCTTCATGGAAATGGAAGCTTTATGGC 870
|||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||
Sbjct 841 GGACATAACAATGGTGTGCTTGGAAGAAAAAGAGCTTTATGGGAATGGAAGCTTCATGGC 900
Query 871 TTCTTCTTCAACAACAACAAGCTTAAGCGACGACAAGAACACAGCAGATTCAAACgagaa 930
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 901 TTCTTCTTCAACAACAACAAGCTTAAGCGACGAAAAGAACACAGCAGATTCAAACGAGAA 960
Query 931 agagaatcgagagatcacagaagtatcaagaagaagaaacaaagaaggagaagaagaaga 990
||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 961 AGAGAATCGAGAGATAACAGAAGTATCAAGAAGAAGAAGCAAAGAAGGTGAAGAAGAAGA 1020
Query 991 ggaagagaataagatgaatgaagaaacaacaatgcagaaacagatagcagagaTGTATAT 1050
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 GGAAGAGAATAAGATGAATGAAGAAACAACAATGCAGAAACAGATAGCAGAGATGTATAT 1080
Query 1051 GAGAAGTATGCAACAGTTCACTGAGTCTTTGGCAAAAATGAAGCTTCCCATGGATCTTCA 1110
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1081 GAGAAGTATGCAACAGTTCACTGAGTCTTTGGCAAAGATGAAACTTCCCATGGATCTTCA 1140
Query 1111 TAATAAACCACACGAGGAAGATCACAGTAACAA---CAACAACACTGCAACTCCA-ATTC 1166
||||||||||||||||||||||||||||||||| ||||||||||||||| | | ||||
Sbjct 1141 TAATAAACCACACGAGGAAGATCACAGTAACAATAACAACAACACTGCAACAC-AGATTC 1199
Query 1167 AAAATCAGAATAATAAT---AATAGTAATGGAATGGAGAAGAAAAAAGAAGGGTCTCGTG 1223
| ||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||
Sbjct 1200 AGAATCAGAATAATAATGCTAATAATAATGGTATGGAGAAGAAAAAAGAAGGGTCTCGTG 1259
Query 1224 TGTTTTACGGTAGCAGAGCATTCTTTTAATGGAATCAACAACAACA---TTGCAAATAAG 1280
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1260 TGTTTTACGGTAGCAGGGCATTCTTTTAATGGAATCAACAACAACAACATTGCAAATAAG 1319
Query 1281 TTGTTTAACATTTTAGCTTCTTCTATGTTTGATTCACATAATCTTCC-TACAACCAATTT 1339
||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||||
Sbjct 1320 TTGTTTAACATTTTAGCTTCTTCTATGTTTGATTCCCATAATCTTCCCT-CAACCAATTT 1378
Query 1340 TT 1341
||
Sbjct 1379 TT 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5