BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488075
Length=1345
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12310.1 | Symbols: | RING/U-box superfamily protein | chr5... 1557 0.0
AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5... 483 2e-135
> AT5G12310.1 | Symbols: | RING/U-box superfamily protein | chr5:3980226-3982442
REVERSE LENGTH=1373
Length=1373
Score = 1557 bits (843), Expect = 0.0
Identities = 979/1041 (94%), Gaps = 24/1041 (2%)
Strand=Plus/Plus
Query 316 CGCCATGACTTCCTCGATCCAGATC---GTTGATGAGCAGCAAGTGGATGTTTTGTCTCT 372
|||||||| |||||||||||||||| ||||| ||| ||||||||||||||||| | |
Sbjct 346 CGCCATGAGTTCCTCGATCCAGATCGTTGTTGAGGAGAAGCAAGTGGATGTTTTG-C-C- 402
Query 373 TCATCAAGATCAGGATGAAAAGAAGACTCAACAAGTGTTCAATGAGCTGAGTTTCGGGAA 432
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 403 TCTTCAAGATCAGGATGAAAAGAAGACTCCACAAGTGTTCAATGAGCTGAGTTTCGGGAA 462
Query 433 CCATGGCGGCTGTTGTGCTATATGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGT 492
|||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 463 CCATGGGGGCTGTTGTGCAATTTGCTTGGATACTATACCTCTTCAAGAAACAGCTATGGT 522
Query 493 TAAAGGCTGTGAACATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAAGA 552
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 523 TAAAGGCTGTGAGCATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAGGA 582
Query 553 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 642
Query 613 CGACGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATC 672
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 CGATGGAAGCGTTGAAGATTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCATC 702
Query 673 ATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAATTATGA 732
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 703 ATGGTTCCAGCCACTGGAAGCAGTGGAGCGGGTTTCAGACAATGACAATTTCAACTATGA 762
Query 733 TTTCGATATTCCACCTGAGTATGAGGA------TGAGGACGACGATGACCTTGACGAGTT 786
|||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 763 TTTCGACATTCCACCTGAGTATGAGGAGGAGGATGAGGACGACGATGACCTTGACGAGTT 822
Query 787 TTATATGCAAGGTTCAAGTCTTCGTTTAGGAAACCGGAGGTGGGGTGACAATGGATTCGT 846
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 823 TTATATGCAAGGTTCAAGTCTTCGATTAGGAAACCGGAGGTGGGGTGACAATGGATTTGT 882
Query 847 CAGGGCAGGCCGCCAAGAAGCAAGGCCGGTTCAACATAAGAACCGAGGTGGACAGGCTTC 906
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 883 GAGGGCAGGCCGCCAAGAAGCAAGGCCAGTCCAACATAAGAACCGAGGTGGCCAGGCTTC 942
Query 907 TGGCTCTGAACCCACTTCTTCATCCTCACGTGAGCCAAAAGATAAGACTAGCAGTGCCAT 966
||||||||||||| | |||||||||||| |||||||||| || |||||||||||||||||
Sbjct 943 TGGCTCTGAACCCGCCTCTTCATCCTCATGTGAGCCAAAGGAGAAGACTAGCAGTGCCAT 1002
Query 967 AACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGC 1026
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1003 AACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAACAAAGCTGCGGAAGC 1062
Query 1027 AGTAGCAGCTGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAGGAAGTGACTGTGGTT 1086
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 1063 AGTAGCAGCTGCAAAGCATGAGGCCCTTTTGGTTAGGTTGGGAAGGAAGTGACTGTGGTT 1122
Query 1087 GTATATCTGTAATTACATTCAACCCACCCCAACCCCAAATGGCCAAATCCATTGACTTCG 1146
|||| ||||||||||||| |||||||||||||||||||||| |||||||| |||||||||
Sbjct 1123 GTATCTCTGTAATTACAT-CAACCCACCCCAACCCCAAATGACCAAATCCTTTGACTTCG 1181
Query 1147 ATACTTGAGAATCTGTACATCAGTAGAATCTAATAATGTTAGAACCACAAAACTTGCTGA 1206
||||||||||||||||||||||||||||| |||||||| |||||| ||| |||
Sbjct 1182 ATACTTGAGAATCTGTACATCAGTAGAATTTAATAATGGTAGAAC--------TTGTTGA 1233
Query 1207 ATCTTTGTCGTTAAGATGCTTTG--CTAGATTTGATTTATTTAGTCTGCAACTTTCTCGA 1264
| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||
Sbjct 1234 ACCTTTGTCGTTAAGATGCTTTGTGCTAGATTTGATTTATTTA-TCTGCAACTTTCTTGA 1292
Query 1265 TCATTTGCTTGATGAGTGAGAGATACTGTGGCTTATGATGTGAGAATTGATCATATGGAA 1324
||| ||||||||||||||||||||||| | |||||||||||| |||||||||||||||||
Sbjct 1293 TCACTTGCTTGATGAGTGAGAGATACTCTCGCTTATGATGTGGGAATTGATCATATGGAA 1352
Query 1325 TGAAGATTAAGTGGTTATGGT 1345
|||||||||||||||||||||
Sbjct 1353 TGAAGATTAAGTGGTTATGGT 1373
Score = 381 bits (206), Expect = 9e-105
Identities = 288/325 (89%), Gaps = 15/325 (5%)
Strand=Plus/Plus
Query 1 ATAAATATTATTTTTATTTTGGGTCGCCGCTTGATTTTCTGGTGGAGAAGTCGTAATCGT 60
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATAAATATTAATTTTATTTTGGGTCGCCGCTTGATTTTCTGGTGGGGAAGTCGTAATCGT 60
Query 61 TAAATTAGGGtcttctcttcttcatcttcttctACATCTCCTCGGCCGTTTCCTACGGAG 120
||||||||||||||| | |||| ||||||||||||||||||| ||||||||||||||||
Sbjct 61 TAAATTAGGGTCTTC-C--CTTCTTCTTCTTCTACATCTCCTCAGCCGTTTCCTACGGAG 117
Query 121 GATTCCGATCGATCCCTTTTCTCTTTATTCTTTT-------GGTCACCGAATCGTTCTCA 173
|||||||||||||||||||||||||| || |||| |||||||||||| || |||
Sbjct 118 GATTCCGATCGATCCCTTTTCTCTTTTTTTTTTTTTCTTCTGGTCACCGAATCATTGTCA 177
Query 174 TACCC-ATTTTGAACTCGCAACTCTTCTTCCTCAGATTGCTAGATTAGGGTTTTCGTCTG 232
||||| | ||||| ||| ||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 178 TACCCCACTTTGAGCTCACAACTCTTCTTCCTCAGATTGCTTGATTAGGGTTTTCTTCTG 237
Query 233 CTTACCGGATAGATTTCGGAGGAACAACTTTGTATTTATCTTCATTACC-AAGTCTTTCG 291
||| ||| || |||||| |||||||||||| ||||||| ||||| ||| || |||||||
Sbjct 238 CTTGCCGAATTGATTTCCAAGGAACAACTTTTTATTTATTTTCATCACCTAA-TCTTTCG 296
Query 292 TTTTCAGATTCCCGGG-ATCCAAAT 315
|||||||||||| | | ||||||||
Sbjct 297 TTTTCAGATTCC-GAGTATCCAAAT 320
> AT5G19430.1 | Symbols: | RING/U-box superfamily protein | chr5:6553825-6555831
FORWARD LENGTH=1156
Length=1156
Score = 483 bits (261), Expect = 2e-135
Identities = 583/732 (80%), Gaps = 48/732 (7%)
Strand=Plus/Plus
Query 376 TCAAGATCAGGATGAAAAGAAGACT-CAACAAGTGTTCAATGAGCTGAGTTTCGGGAACC 434
|||| ||||||| ||||||||| | || ||| | || |||||| |||||||||||| |
Sbjct 239 TCAAAATCAGGACAAAAAGAAGA-TCCAGGAAGAGATCCATGAGCCGAGTTTCGGGAATC 297
Query 435 ATGGCGGCTGTTGTGCTATATGCTTGGA-T-ACTATACCTCTTCAAGAAACAGCTATGGT 492
|||| ||||||||||| ||||| || || | | || |||||||||||||| ||||||||
Sbjct 298 ATGGTGGCTGTTGTGCAATATG-TTTGAGTGA-AATTCCTCTTCAAGAAACTGCTATGGT 355
Query 493 TAAAGGCTGTGAACATGCTTACTGTGTGACGTGCATACTCCGTTGGGCAAGTTACAAAGA 552
|||||||||||||| ||||||||||||| |||||||| |||||||| |||| ||||||
Sbjct 356 CAAAGGCTGTGAACACACTTACTGTGTGACATGCATACTTCGTTGGGCGAGTTGCAAAGA 415
Query 553 GAAACCTACCTGCCCACAATGTAAGCTTCCATTTGATTTTCTCAATGTCCACCGCGCTCT 612
|| || || |||||||||||||||| ||||||||||||||||| ||||||||| || ||
Sbjct 416 GAGTCCCACATGCCCACAATGTAAGCATCCATTTGATTTTCTCAGTGTCCACCGAGCACT 475
Query 613 CGACGGAAGCGTTGAAGA-TTTCATGTTCGAGGAGAGTGTATGCCTCCTCCTGAGGGCAT 671
|| || ||| ||||||| |||| |||| ||||||||||| ||||| ||||| || || |
Sbjct 476 TGATGGCAGCATTGAAGATTTTC-TGTTTGAGGAGAGTGTGTGCCTTCTCCTTAGAGCCT 534
Query 672 CATGG-TTCCAGCCACTGGAAGCAGTGGAGC-GG-GT--TTCAGACAATGACAATTTCAA 726
||||| || | ||| |||| | ||||| | || || | ||| | ||| || | |
Sbjct 535 CATGGTTTGTA-CCATTGGATGTGGTGGAACAGGCGTCGTACAG-CCATG---GTTACCA 589
Query 727 TTATGATTTCGATATTCCACCTGAGTATGAGGATGAGGACGACGATGACCTTGACGAGTT 786
| ||||||| || ||||| ||| || |||||||| | || |||||||||||||||||
Sbjct 590 TGATGATTTTGACATTCCTTATGACTACGAGGATGA--A-GATGATGACCTTGACGAGTT 646
Query 787 TTATATGCAAGGTTCAAGTCTTCGTTTAGGAAACCGGAGGTGGGGTGACAATGGATTCGT 846
|||| |||| || ||||||||||| ||||||| ||||| ||||||| |||||| || ||
Sbjct 647 TTATCTGCACGGCTCAAGTCTTCGCATAGGAAATCGGAGATGGGGTGGCAATGGTTTTGT 706
Query 847 CAGGGCAGGCCGCCAAGAAGCAAGGCCGGTTCAACATAAGA-ACCGAGGTGG-ACAGGCT 904
||| | || || |||||||| ||||| | || || ||| | | | |||| | || |
Sbjct 707 CAGATCCGGGCGTCAAGAAGCCAGGCCTG-TC--CA-GAGATA-C-A-GTGGTTCTGG-T 758
Query 905 TCTGGCT-CTGAACCCA-CTTCT---TCATCCTCACGTGAGCCAAAAGATAAG-A-CTAG 957
||| | | | | ||| | ||| ||||||||| ||||||| || |||||| | | |
Sbjct 759 TCTAGTTCCAG-TTCCAGC-TCTGGGTCATCCTCAAGTGAGCCTAAGGATAAGCAGGT-G 815
Query 958 CAG-TG-C---CATAACAGGAAGGCGTGCAAAGAGGGCAATGAAGCGTGAAGCTGCAAAC 1012
|| | | || ||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 816 AAGACGACAAACACAACAGGAAGACGTGCAAAAAGGGCAATGAAGCGTGAAGCTGCAAAC 875
Query 1013 AAAGCTGCGGAAG-CAGTAGCAGCTGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAG 1071
||||| ||||||| | | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 876 AAAGCAGCGGAAGTAACT-GCAGCAGCAAAGCACGAGGCCCATTTGGTTAGGTTGGGAAG 934
Query 1072 GAAGTGACTGTG 1083
||||||| ||||
Sbjct 935 GAAGTGAGTGTG 946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66214518855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5