BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488076

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12320.1 | Symbols:  | ankyrin repeat family protein | chr5:...   870    0.0  


> AT5G12320.1 | Symbols:  | ankyrin repeat family protein | chr5:3982684-3984078 
FORWARD LENGTH=692
Length=692

 Score =  870 bits (471),  Expect = 0.0
 Identities = 538/570 (94%), Gaps = 6/570 (1%)
 Strand=Plus/Plus

Query  1    aaaaaaaaaaaGGAATCGGACAAATAACACCAGAGTAG-AACCAGAAACCCTCAGATTGA  59
            ||||||||||||||||||||| || || |||| ||| | ||||||||||||||||| |||
Sbjct  2    AAAAAAAAAAAGGAATCGGAC-AA-AA-ACCA-AGT-GAAACCAGAAACCCTCAGACTGA  56

Query  60   AATTGGTATTGGCCGGTGGAGAATGGGAGCAGAAACAAACGTAGTTGCAGAGAAAGTTGA  119
            ||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| ||
Sbjct  57   AATTGGTATTGGCCGGTGGAGGATGGGAGCAGAGACAAACGGAGTTGCAGAGAAAGTCGA  116

Query  120  GGACTTGCTTGAGGCTGCTAGATACAATGATATTGATGATCTCAGAACCTTGGCCTCTGA  179
             |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  117  CGACTTGCTGGAGGCTGCTAGATACAATGATATTGATGATCTCAGAACCTTGGCCTCTGA  176

Query  180  TGGTGTCTCTCTTGACTCTCGTGATTCACAAGGCCGTACAGCCCTGCATATGGCCGCGGC  239
            |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  177  TGGTCTCTCTCTTCACTCTCGTGATTCACAAGGCCGAACAGCCCTGCATATGGCCGCAGC  236

Query  240  GAATGGACATATGACTATAGTGGAGTATCTTATCAGTCAAGGAGTGGATATTAATGCTCT  299
            ||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||||
Sbjct  237  GAATGGACATATGACTATAGTGGAGTATCTTATCAGTGAAGGAGTGGATATCAACGCTCT  296

Query  300  TAACGATGAGAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCGTGTTGAGGTGGT  359
            ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct  297  TAACGATGAGAACAATGCTCCTCTACATTGGGCATGCTTGAATGGCCATGTCGAGGTGGT  356

Query  360  GAAGAGATTGATCTTGGCTGGAGCAAGTCTAAGTCTTTTGAATCGGTACGAGAGGACTCC  419
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  357  AAAGAGATTGATCTTGGCTGGAGCAAGTCTAAGTCTTTTGAATCGGTACGAGAGAACTCC  416

Query  420  AATGGATGAAGCCATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACAACTGT  479
            |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  417  AATGGATGAAGCTATTGGTGCGGAGAAGATGGAGATTATAGATGCTATTAACACAACTGT  476

Query  480  TGCACAAATGGAACTTGAAAATACCAGTGTGACATGACTTTTCAGACATCTTCATCCTCA  539
            ||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct  477  TGCCCAAATGGAACTTGAAAATACCAGTATGACATGACTTTTCAGACAACTTCATCCTCA  536

Query  540  GCATCCTAAATGTTCTCTTTCCGTCCCTCT  569
            |||||||||||||| ||| || ||| ||||
Sbjct  537  GCATCCTAAATGTTTTCTCTCTGTCTCTCT  566



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27427844262


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5