BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488079
Length=1369
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12330.4 | Symbols: LRP1 | Lateral root primordium (LRP) pro... 1402 0.0
> AT5G12330.4 | Symbols: LRP1 | Lateral root primordium (LRP) protein-related
| chr5:3987375-3989833 REVERSE LENGTH=1951
Length=1951
Score = 1402 bits (759), Expect = 0.0
Identities = 842/882 (95%), Gaps = 6/882 (1%)
Strand=Plus/Plus
Query 306 CTGTGGCTACAACGAGGAGGCATAATCTACCGACGTCGGATTCCGGTGCGTTCACCGACT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 448 CTGTGGCTACAACGAGGAGGCATAATCTACCGACGTCGGATTCCGGTGCGTTCACCGACT 507
Query 366 GGGCGGCGACGACGACGACACCTTCCCGTGCCACCGAGGATCTATCTCTTGGTTTCAATG 425
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 508 GGGCGGCCACGACGACGACACCTTCCCGTGCCACCGAGGATCTCTCTCTTGGTTTCAATG 567
Query 426 CTGGTCCCTCCGTCATCCACGGTGGTATAGGCTCAGCTTCCGTCGCCGCCGGCGTTCCAT 485
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 568 CTGGTTCCTCCGTCATCCACGGTGGTTTAGGCTCAGCTTCCGTCGCCGCCGGCGTTCCAT 627
Query 486 CATGGCATCCTGGATCTTCTGTCCGTTACGGCCTACCTTCGTCGGCGGCGGCGACGGAGA 545
|||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 628 CATGGCCTCCGGGATCTTCTGTCCGTTACGGCCTACCTTCTTCGGCGGCGGCGACGGAGA 687
Query 546 TGGGCATGGTGGGTCTGCGAGACGTCTTCGTTGTTGCTCCGGCTTATCATCACCAGAACG 605
|||||||||| ||||| |||| || ||| ||||||||||||||||||| ||||||||||
Sbjct 688 TGGGCATGGTTGGTCTAAGAGATGTATTCCTTGTTGCTCCGGCTTATCACCACCAGAACG 747
Query 606 CTGGAGTTATATCTGGATCGGAACATATGAACAGTAATGCAGCTGCGGCGGCG-C--TCG 662
| ||||| ||||||||||| || |||||||||||||||||||||||||||||| | |||
Sbjct 748 CCGGAGTGATATCTGGATCCGATCATATGAACAGTAATGCAGCTGCGGCGGCGGCGCTCG 807
Query 663 GTGTCGGAGTGATTCCTCTACTCACGGCGGGTCCACCGCAGCAAAACGTGGAAGACTCCG 722
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 808 GTGTCGGAGTGATTCCTCTACTCACGGCGGGTACACCGCAGCAAAACGTGGAAGACTCCG 867
Query 723 ACATTAACTTCCTCGGAAACAACCGGAGATGGCAGAACAACAACAACACCCACGAAACGC 782
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 868 ACATTAACTTCCTCGGAAACAACCGGAGATGGCAGAATAACAACAACAACCACGAAACGC 927
Query 783 AGTATCTTCACTTCAAGAGTACTAACCAGACAACGGTCGGAACGAGTTCGAACAACTCGG 842
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 928 AGTATCTTCACTTCAAGAGTACTAACCAGACAACGGTCGGAACGAGCTCGAACAACTCGG 987
Query 843 GGTCTGGCTCAGGCGTATCGGGAACCGCCACGTGTCAAGACTGTGGAAATCAGGCGAAGA 902
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 988 GGTCTGGCTCAGGCGCATCAGGAACCGCCACGTGTCAAGACTGTGGAAATCAGGCGAAGA 1047
Query 903 AGGAGTGTAAGCAGAGGCGGTGCAGGACGTGCTGCAAGAGCCGTGGCTTTGATTGTTCTA 962
| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1048 AAGAGTGTAAGCAGAGGCGGTGTAGGACTTGCTGCAAGAGCCGTGGCTTTGATTGTTCTA 1107
Query 963 CTCACGTGAAGAGCACGTGGGTCTCTGCCGCTCGGCGGAGAGAGAGGCAGGTCATGCCTA 1022
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1108 CTCACGTGAAGAGCACGTGGGTCTCTGCTGCTCGGCGGAGAGAGAGGCAGGTCATGCCTA 1167
Query 1023 CCGGCGCCAATCCAACGGCTGGCTCGTCTCTGTCGACCTCCTCCGGGACGAAGAAGCCGA 1082
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1168 CCGGCGCTAATCCAACGGCTGGCTCGTCTCTTTCGACCTCCTCCGGGACGAAGAAGCCGA 1227
Query 1083 GGATCGCAGGGTCTcaacaacaacaacaacaa---GCCACTTCTCATACTTCAACTTCTA 1139
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1228 GGATCGTAGGGTCTCAACAACAACAACAACAACAAGCCACTTCTCATACTTCAACTTCTA 1287
Query 1140 ACACGCCTCCTCAAAGTTTCGAGACCAGTTCCAGCCGACAAG 1181
|||| || |||||||||||||||||||| |||||||||||||
Sbjct 1288 ACACACCACCTCAAAGTTTCGAGACCAGCTCCAGCCGACAAG 1329
Score = 279 bits (151), Expect = 4e-74
Identities = 217/245 (89%), Gaps = 19/245 (8%)
Strand=Plus/Plus
Query 2 GAAAGTAGGAAACGGGTCAGATTGTTagagagagagagGAAGCG-A-AAAAAGAGTCGCA 59
||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 214 GAAAGTAGGAAACGGGTCAGATTGTTAGATAGAGAGAGGAAGCGAAGAAAAAGAGTCGCA 273
Query 60 GTGTTCTTTTTCCTCTGCGTGAGCAGAGACAAACAGAGATAGTGACAGTAGATTTCG-AA 118
||||||||||||| |||||| | ||| ||||||||||||||| |||||||| ||
Sbjct 274 GTGTTCTTTTTCCACTGCGT--G-TGAG-----CAGAGATAGTGACAGAAGATTTCGAAA 325
Query 119 AAATCTAttttggatttgtttttgtttttggttttATCGGAAAAATTTGTAGGATCCATC 178
||||||||||||||||||||||||||||||||||||| | || | |||||||||||
Sbjct 326 AAATCTATTTTGGATTTGTTTTTGTTTTTGGTTTTAT---AGCAA--T-TAGGATCCATC 379
Query 179 TTCATCTTTCTCTATC--AGCTCAGATTTGTATAGATTTATGGGTTATGTGCATTGGAGC 236
|||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||
Sbjct 380 TTCATCTTTCTCTATCAAAGCTCAGATTTGTGTAGATTTATGGGTTATGTACATTGGAGC 439
Query 237 TGTGT 241
| |||
Sbjct 440 TTTGT 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67419331935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5