BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488082

Length=961
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12360.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...  1230    0.0  
  AT5G12350.1 | Symbols:  | Regulator of chromosome condensation ...   167    2e-40


> AT5G12360.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT3G14190.1); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:4000699-4002634 REVERSE LENGTH=1047
Length=1047

 Score = 1230 bits (666),  Expect = 0.0
 Identities = 780/834 (94%), Gaps = 12/834 (1%)
 Strand=Plus/Plus

Query  132   TTGTTTAGCTGTTGATTTGGAGTTCCTCTATCCGCTCATCGGCATCTGGTGAGCATGGCC  191
             |||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||||
Sbjct  219   TTGTTTAGCTGTTGATTTGGAGTTTCTCTATCCGCTCATCGGCATCT-TTGAGCATGGCC  277

Query  192   AACACAATTGC-ACGCGGGCAGATGATTTTCCAGGACGAGAATGCATTGGCGGCCCATGG  250
             ||||||||| |  ||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct  278   AACACAATT-CTTCGCGGGCAGATGATTTTTCAGGACGAGAATGCATTGGCGGCCCTTGG  336

Query  251   AAAAAAGGCGGTTGCTGCTGGAAAAGGTAAGAGTTCGCTCGCAGCTCCAAAGAAAAACGG  310
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  337   AAAAAAGGCGGTTGCTGCTGGAAAAGGTAAGAGTTCACTCGCAGCTCCAAAGAAAAATGG  396

Query  311   GACGGGTTTCGGAAACCGCAAGGCTCTGCATGATATTACAAACAAGTCAAAGTTGCAACC  370
             | |||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct  397   GGCGGGTTTCGGAAGCCGCAAGGCTCTCCATGACATTACAAACAAGTCAAAGTTGCAACC  456

Query  371   TCAAGCTTCTTCCAAGACGAAGAAGAATGTTGAGGGAGTGGACTTTGACATAGCAAAGGA  430
             ||||||||| |||| ||||| |||| |||||||||||||||| |||||||||||||||||
Sbjct  457   TCAAGCTTCATCCACGACGAGGAAGGATGTTGAGGGAGTGGATTTTGACATAGCAAAGGA  516

Query  431   AGGTTTCTTGCATGATCACAGAAAATGCATTGAAGAACAACAACAAAATCAGTGGGATAG  490
             ||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct  517   AGGTTTCTTGCATGATCACAGCAAATGCATTGAAGAACAACAACAAGACCAGTGGGATAG  576

Query  491   CTACTTCTCTGAACACATCATCCTTCATGGACATGATACCAACATCAACGAAGGGGTTCC  550
             |||||||||||||||||||||||| ||||||||||| || |||||||| |||||||||||
Sbjct  577   CTACTTCTCTGAACACATCATCCTGCATGGACATGAGACAAACATCAAAGAAGGGGTTCC  636

Query  551   TGAATACAATAATAGTAAAGAGATTGATGATGAGGACAGCCACACTTGGGATGAACTCAA  610
             | |||||||||||| | |||||||||||| ||| || |  ||  | ||||||||||||||
Sbjct  637   TCAATACAATAATATTCAAGAGATTGATGCTGA-GA-A--CA-GC-TGGGATGAACTCAA  690

Query  611   AGAGATACCAACGGAGGAGTTTTCCGATCTGCTGGAATGCTCAACTCAATGGCGTTCACC  670
             ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  691   AGAGATACCAATGGAGGAGTTTTCCGATCTGCTGGAATGCTCAACTCAATGGCGCTCACC  750

Query  671   ACCAGACTCGCCCATCCATCACCATTCTTCGTTACCTTCATCGCCTTTGCCATGGCATTT  730
             ||||||||| |  | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  751   ACCAGACTCACTAAGCCATCACCATTCTTCGTTACCTTCATCGCCTTTGCCATGGCATTT  810

Query  731   TGAAACCGTAGAATTCAAGCTCAAGGAAGATGAAGACACCACCTGAGGTCCAGTTTTACT  790
             |||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct  811   TGAAACTGTAGAATTCAAGCTCAAGGAGGATGAAGACACCACTTGAGGTCCAGTTTTACT  870

Query  791   TTAGTT-TTGtttttttGTTGGAATAATATCAGTACCTTCTTAGTTTCCAATGTGATGAT  849
             |||||| || |||||||||||||| |||||||||| |||||||||||| |||||||||||
Sbjct  871   TTAGTTGTTTTTTTTTTGTTGGAACAATATCAGTAACTTCTTAGTTTCTAATGTGATGAT  930

Query  850   GTATCTACAAATCTGCTCGAAAACCAATTACTCAGCATTGTTTCTAGGGGGTAAAAACAC  909
             |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  931   GTATCTACAAATCTGCTCGAAATCCAATTACTCAGCATTGTTTCTAGGGGGTAAAAACAC  990

Query  910   TGTATGTTT-ATAGGATTTACAGAATGATT-AACCACAAAGAATTTACAACTTT  961
             ||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct  991   TGTATGTTTTATAGGATTTACAGAATGATTTAACCACAAAGAATTTACAACTTT  1044


> AT5G12350.1 | Symbols:  | Regulator of chromosome condensation 
(RCC1) family with FYVE zinc finger domain | chr5:3995342-4000801 
FORWARD LENGTH=3931
Length=3931

 Score =  167 bits (90),  Expect = 2e-40
 Identities = 97/100 (97%), Gaps = 2/100 (2%)
 Strand=Plus/Minus

Query  864   GCTCGAAAACCAATTACTCAGCATTGTTTCTAGGGGGTAAAAACACTGTATGTTT-ATAG  922
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  3931  GCTCGAAATCCAATTACTCAGCATTGTTTCTAGGGGGTAAAAACACTGTATGTTTTATAG  3872

Query  923   GATTTACAGAATGATT-AACCACAAAGAATTTACAACTTT  961
             |||||||||||||||| |||||||||||||||||||||||
Sbjct  3871  GATTTACAGAATGATTTAACCACAAAGAATTTACAACTTT  3832



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 47019161592


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5