BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488086
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12380.1 | Symbols: ANNAT8 | annexin 8 | chr5:4009223-401068... 1568 0.0
AT5G12390.1 | Symbols: FIS1B | Tetratricopeptide repeat (TPR)-l... 303 1e-81
> AT5G12380.1 | Symbols: ANNAT8 | annexin 8 | chr5:4009223-4010687
FORWARD LENGTH=951
Length=951
Score = 1568 bits (849), Expect = 0.0
Identities = 912/943 (97%), Gaps = 2/943 (0%)
Strand=Plus/Plus
Query 1 ATGGCCACCATTGTTTCTCCTTCGCATTTCTCCCCTGTCGAAGACGCTGAAAACATCAAG 60
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCACCATTGTTTCTCCTCCACATTTCTCCCCTGTCGAAGACGCTGAAAACATCAAG 60
Query 61 GCCGCTTGTCAAGGATGGGGAACCAATGAAAAGGCCATCATCTCGATCCTAGGACACCGG 120
|| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 61 GCGGCTTGTCAAGGATGGGGAACCAATGAAAATGCCATCATCTCGATCTTAGGACACCGG 120
Query 121 AATTTGTTCCAGAGGAAGCTCATAAGACAAGCTTACCAGGAGATATACCATGAGGATCTC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AATTTGTTCCAGAGGAAGCTCATAAGACAAGCTTACCAGGAGATTTACCATGAGGATCTC 180
Query 181 ATTCACCAGCTCAAATCTGAGCTCTCTGGCAATTTTGAGAGAGCTATTTGCTTGTGGGTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTCACCAGCTCAAATCTGAGCTCTCTGGCAATTTTGAGAGAGCTATTTGCTTGTGGGTC 240
Query 241 TTGGATCCTCCAGAGAGAGATGCTCTCTTGGCTCACTTGGCTCTTCAAAAGCCTATTCCT 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 241 TTGGATCCTCCAGAGAGAGATGCTCTCTTGGCTAACTTGGCTCTTCAAAAGCCTATTCCT 300
Query 301 GACTACAAGGTTCTTGTTGAAATTGCCTGCATGAGATCCCCTGAAGATCTATTAGCTGCT 360
||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 301 GACTACAAGGTTCTTGTCGAAATTGCCTGCATGAGATCCCCTGAAGATATGTTAGCTGCT 360
Query 361 AGACGTGCTTACCGTTGCCTCTACAAGCGTTCTCTTGAGGAAGACTTGGCCTCCCGTACT 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 361 AGACGTGCTTACCGTTGCCTCTACAAGCATTCTCTTGAGGAAGACTTGGCCTCCCGTACT 420
Query 421 ATTGGCGACATTAGGAGACTCTTGGTTGCAATGGTGTCTGCTTATAAATATGATGGAGAA 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATTGGCGACATCAGGAGACTCTTGGTTGCAATGGTGTCTGCTTATAAATATGATGGAGAA 480
Query 481 GAAATTGATGAGATGCTGGCACAATCAGAGGCTGCGATTCTTCATGATGAAATCCTTGGT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 GAAATTGATGAGATGCTGGCGCAATCAGAGGCTGCGATTCTTCATGATGAAATCCTTGGT 540
Query 541 AAGGCTGTTGATCACGAAGAAACGATCAGGGTTTTAAGTACAAGGAGCAGCATGCAGCTT 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 AAGGCTGTTGATCACGAAGAAACGATCAGGGTGTTAAGTACAAGGAGCAGCATGCAGCTT 600
Query 601 AGCGCAATCTTCAACCGCTACAAGGATATATATGGCAGATCGATCACTAAGGATCTCCTC 660
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 601 AGCGCAATCTTCAACCGCTACAAGGATATATATGGCACATCGATCACTAAGGATCTCCTC 660
Query 661 AATCACCCTACAAATGAGTACCTGAGTGCACTACGTGCAGCCATCAGGTGCATCAAAAAC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AATCACCCTACAAATGAGTACCTGAGTGCACTACGTGCAGCCATCAGGTGCATCAAAAAC 720
Query 721 CCTATCCGGTATCACGCAAAGGTATTGCGCAATTCAATCAACACTGTGGGGACTGATGAA 780
|||| ||||||| | |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 721 CCTACCCGGTATTATGCAAAGGTTTTGCGCAATTCAATCAACACGGTGGGGACTGATGAA 780
Query 781 GATGCTCTGAACCGTGTGATTGTCACACGAGCAGAAAAGGACCTGAAGAATATAACTGAG 840
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 781 GATGCTCTGAACCGTGTGATTGTCACACGAGCAGAAAAGGACCTGACGAATATAACTGGG 840
Query 841 CTATA-TCACAAGAGGAACAATGTGAGTCTCGATCAAGCCATAGCAAAAGAGACATCCGG 899
|| || | ||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 841 CTGTACTTT-AAGAGGAACAATGTGAGTCTCGATCAAGCTATAGCAAAAGAGACATCAGG 899
Query 900 GGACTACAAGGCTTTTCTTCTAGCCTTGCTAGGACATGGAAAA 942
|||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 900 GGACTACAAGGCCTTTCTTCTAGCTTTGCTAGGACATGGAAAA 942
> AT5G12390.1 | Symbols: FIS1B | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4010443-4012039 REVERSE LENGTH=1098
Length=1098
Score = 303 bits (164), Expect = 1e-81
Identities = 191/204 (94%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 740 AGGTATTGCGCAATTCAATCAACACTGTGGGGACTGATGAAGATGCTCTGAACCGTGTGA 799
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1065 AGGTTTTGCGCAATTCAATCAACACGGTGGGGACTGATGAAGATGCTCTGAACCGTGTGA 1006
Query 800 TTGTCACACGAGCAGAAAAGGACCTGAAGAATATAACTGAGCTATA-TCACAAGAGGAAC 858
||||||||||||||||||||||||||| ||||||||||| ||| || | |||||||||
Sbjct 1005 TTGTCACACGAGCAGAAAAGGACCTGACGAATATAACTGGGCTGTACTTT-AAGAGGAAC 947
Query 859 AATGTGAGTCTCGATCAAGCCATAGCAAAAGAGACATCCGGGGACTACAAGGCTTTTCTT 918
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 946 AATGTGAGTCTCGATCAAGCTATAGCAAAAGAGACATCAGGGGACTACAAGGCCTTTCTT 887
Query 919 CTAGCCTTGCTAGGACATGGAAAA 942
||||| ||||||||||||||||||
Sbjct 886 CTAGCTTTGCTAGGACATGGAAAA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5