BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488088
Length=1257
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12410.1 | Symbols: | THUMP domain-containing protein | chr... 1310 0.0
> AT5G12410.1 | Symbols: | THUMP domain-containing protein | chr5:4021815-4023988
REVERSE LENGTH=1328
Length=1328
Score = 1310 bits (709), Expect = 0.0
Identities = 814/863 (94%), Gaps = 14/863 (2%)
Strand=Plus/Plus
Query 370 AGTGAAGGCGGTAATGATCAAGTGAATGAGAAAGAAATAGCTAGTGAAGGGTCATGTGAA 429
|||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 429 AGTGAAGGAGTTAATGATCAAGTGAATGAGAAAGAAATAGCAAGTGAAGGGTCATGTGAA 488
Query 430 GTaaaaaaattggaagaaaatgagactgaaaaagaggaagaagataaagggaatcagaag 489
|| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 489 GTCAAACAATTGGCAGAAAATGAGACTGTAAAAGAGGAAGAAGATAAAGGGAATCAGAAG 548
Query 490 aaCGGTGGAGATGAACCTCCAAGAAAGAAGACATGTACGGAAGAAGCAAATCCTTTAGCA 549
|| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 549 AATGGTGGAGATGAACCTCCTAGAAAGAAGACGTGTACGGAAGAAGCAAATCCTTTAGCA 608
Query 550 AAAGTAAATGAAAATGCGGAGAAGTCTATTGATAAGTTGATTGAAGCTGAACTAAAAGAA 609
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 AAAGTAAACGAAAATGCAGAGAAGTCTATTGATAAGTTGATTGAAGCTGAACTAAAAGAA 668
Query 610 CTTGGGGACAAGAGTAAGAGACGGTTCATGAAGTTAGATCCGGGTTGCAACGGTCTGGTC 669
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 CTTGGAGACAAGAGTAAGAGACGGTTCATGAAGTTAGATCCGGGTTGCAACGGTCTGGTC 728
Query 670 TTCATCCAAATGAAAAGGAGAGATGGTGACCCAAGTCCCAAAGATATTGCACAGCATGCA 729
|||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 729 TTCATCCAAATGAAAAAGAGAGATGGTGACCCAAGTCCCAAAGAAATTGTACAGCATGCT 788
Query 730 ATGA-TATCTGCTGCTGCCACAAAAAAGCATATGTCAAGGTTCATCCTAAGACTTCTACC 788
|||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 789 ATGACT-TCTGCTGCTGCAACAAAAAAGCATATGTCAAGGTTCATCCTAAGACTTCTACC 847
Query 789 AATTGAAGTATCGTGTTACCCTTCAGAGGAAGAAATTTCAAGAGCCATCAAGCCTCTTGT 848
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 848 AATTGAAGTGTCGTGTTACCCTTCAGAGGAAGAAATTTCAAGAGCCATCAAGCCGCTTGT 907
Query 849 AGAACAGTACTTCCCCATTGAGACCGAAAATCCCCGGAAATTTGCTGTGTTGTATGGAGC 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 908 AGAACAGTACTTCCCCATTGAGACCGAAAATCCCCGGAAATTTGCTGTGTTGTATGGAGC 967
Query 909 ACGTGCTAACACAGGGCTTGATAGGATGAAAATAATAAACACGATCGCCAAATCTATTCC 968
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 GCGTGCTAACACAGGGCTTGATAGGATGAAAATAATAAACACGATCGCCAAATCTATTCC 1027
Query 969 TGCCCCTCACAAAGTTGATTTGAGCAATCCAGAGATGTCGATCGTGGTGGAAGTTGTTAA 1028
|||||||||||||||||||||||||||||| |||||| |||||||||||||| || ||||
Sbjct 1028 TGCCCCTCACAAAGTTGATTTGAGCAATCCGGAGATGACGATCGTGGTGGAAATTATTAA 1087
Query 1029 GACAGTTTGCTTAATTGGAGTGGTAGAGAAGTATAAGGAGCTAGCAAAGTACAACCTCAG 1088
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1088 GACAGTGTGCTTAATTGGAGTGGTAGAGAAGTACAAGGAGCTAGCAAAGTACAACCTCAG 1147
Query 1089 GCAGCTCACGTCGACCAATTGACACAATCTCCTCTTCTTCTATCTTTACCTATGTTTTGT 1148
|||||||||||||||||||||||||| ||| |||| || ||||||| |||||||| ||
Sbjct 1148 GCAGCTCACGTCGACCAATTGACACA-TCT--TCTT-TT--ATCTTTAACTATGTTTCGT 1201
Query 1149 TTGTTAAGACTGGAGATGCTCT-GTGTTTACTGG-A-AG--TT-CTGGCTCAACTTATTA 1202
|| ||||||||| ||||||| | ||||||| || | || || |||||| |||||||||
Sbjct 1202 TTCTTAAGACTGAAGATGCTTTTGTGTTTAGTGTTACAGAGTTTCTGGCTTAACTTATTA 1261
Query 1203 AAATGGCTGAAGTTGCCCTTTAT 1225
|||||||||||||||||||||||
Sbjct 1262 AAATGGCTGAAGTTGCCCTTTAT 1284
Score = 675 bits (365), Expect = 0.0
Identities = 401/419 (96%), Gaps = 0/419 (0%)
Strand=Plus/Plus
Query 1 tctctctctctctctcCGTCGATGGCTTCCGGTGACCAGAGCAAGAAGAGAAAACAGCAT 60
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 18 TCTTTCTCTCTCTCTCCGACGATGGCTTCCGGTGACCAGAGCAAGAAGAGAAAACAGCAT 77
Query 61 TATCGCCCTCAAAACAGACCAGTGAAGAAGAAGGGATCTTACCCTTTGAAGCCAGGCGTT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 78 TATCGCCCTCAAAACAGACCAGTGAAGAAGAAGGGATCTTACCCTTTGAAGCCAGGTGTT 137
Query 121 CAAGGTTTCTTCATCTCTTGCGATGGTGGACGCGAATACCAAGCTTCTCAGGAAGCTATT 180
|||||||| ||||||||||||||||| |||||||||| ||||||| ||||||||||||||
Sbjct 138 CAAGGTTTTTTCATCTCTTGCGATGGCGGACGCGAATTCCAAGCTGCTCAGGAAGCTATT 197
Query 181 AACGTCATTGATTCCTTTTTCGAGGAGCTAATACAGGGGACCGACTCGAAAGTTAATCCT 240
||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 198 AACGTCATTGATTCCTTTTTCGAGGAGCTAATACAAGGGACTGACTCGAAAGTGAATCCT 257
Query 241 GGTTTGTTTGATAACCCAATAAACAAAAAAGTTACATTTTCGTATAGCGAGGATGAGGAT 300
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 258 GGTTTGTTTGGTAATCCAATAAACAAAAAAGTTACATTTTCGTATAGCGAGGATGAGGAT 317
Query 301 GATGAGGAAGATGAGAGTAATTATGGCGAGGAAGAGGAGAACAAAGGGGATGGAGATAAG 360
|| |||||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct 318 GAGGAGGAAGATGAGAGTAATAATGGCGAGGAAGAGGAAAACAAAGGAGATGGGGATAAG 377
Query 361 GCAGTAGTGAGTGAAGGCGGTAATGATCAAGTGAATGAGAAAGAAATAGCTAGTGAAGG 419
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 378 GCAGTAGTGAGTGAAGGCGGTAATGATCTAGTGAATGAGAAAGAAATAGCTAGTGAAGG 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61796870895
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5