BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488092
Length=192
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12450.1 | Symbols: | FBD-like domain family protein | chr5... 302 1e-81
AT1G48390.1 | Symbols: | RNI-like superfamily protein | chr1:1... 200 4e-51
AT1G47950.1 | Symbols: | transposable element gene | chr1:1767... 169 1e-41
> AT5G12450.1 | Symbols: | FBD-like domain family protein | chr5:4040937-4041128
FORWARD LENGTH=192
Length=192
Score = 302 bits (163), Expect = 1e-81
Identities = 179/187 (96%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 6 AGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 AGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGG 65
Query 66 AAAGTTGGAATGTCTTGAAACTGTGAAAGTTAGTGTTGTGGACGCAGACAACAACAGCAA 125
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 66 AATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTGTGGACGCAGACAACAACAGTAA 125
Query 126 GCTCTTGCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAATGCAACATACAATT 185
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 126 GCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAATGCAACATCCAATT 185
Query 186 CATCTGA 192
|||||||
Sbjct 186 CATCTGA 192
> AT1G48390.1 | Symbols: | RNI-like superfamily protein | chr1:17879448-17880903
REVERSE LENGTH=1242
Length=1242
Score = 200 bits (108), Expect = 4e-51
Identities = 169/196 (86%), Gaps = 14/196 (7%)
Strand=Plus/Plus
Query 7 GAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTGGGA 66
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1051 GAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGAACAGATGAGACATTTCTTGGGC 1110
Query 67 AAGTTGGAATGTCTTGAAACTGTGAAAGTTAGTGTTGTGGACGCAGACAACAA---CAGC 123
||||||||| |||||||||||||||||||| ||||| ||||||| ||||| || |
Sbjct 1111 AAGTTGGAACGTCTTGAAACTGTGAAAGTTGGTGTTC---ACGCAGAAAACAATAACAAC 1167
Query 124 AA-GC-T-CTTGCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAA-TGCAACAT 179
|| | | ||||||| ||||||| ||| ||||||||||||| |||||| || |||||||
Sbjct 1168 AATGAGTTCTTGCGAGCTAATCTACTGACTCTCCCCAGACTCTCATCA-AAGTGCAACAA 1226
Query 180 -A-C-AATTCATCTGA 192
| | |||||||||||
Sbjct 1227 CATCCAATTCATCTGA 1242
> AT1G47950.1 | Symbols: | transposable element gene | chr1:17675488-17681953
REVERSE LENGTH=6466
Length=6466
Score = 169 bits (91), Expect = 1e-41
Identities = 160/192 (83%), Gaps = 9/192 (5%)
Strand=Plus/Plus
Query 4 CTAGAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCTTG 63
|||||||||| ||| ||||||||||| |||||||||||| | ||||| |||||||||||
Sbjct 6278 CTAGAGATTTTAGACTATGGAGGTTCATTTCAAGAGCTGCAACAGATAAGACATTTCTTA 6337
Query 64 GGAAAGTTGGAATGTCTTGAAACTGTGAAAGTTAGT-GTTGTGGACGCAGACAACAACA- 121
|| |||||||||||||||||||||||||||||| || |||| ||||| || ||| |||
Sbjct 6338 GGCAAGTTGGAATGTCTTGAAACTGTGAAAGTT-GTTGTTGACGACGCGGATAACTACAA 6396
Query 122 GCAAGC-TCTT-GCGAACTAATCTGCTGTCTCTCCCCAGACTTTCATCAGAA-TGCA-AC 177
| || | || |||| ||| ||||||| ||||||||||| |||||||| || |||| |
Sbjct 6397 GGGTGCGTTTTTGCGAGCTAGTCTGCTGACTCTCCCCAGAGTTTCATCA-AACTGCAGAG 6455
Query 178 ATACAATTCATC 189
| |||||||||
Sbjct 6456 -TCCAATTCATC 6466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8500928319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5