BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488094
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12460.1 | Symbols: | Protein of unknown function (DUF604) ... 2002 0.0
> AT5G12460.1 | Symbols: | Protein of unknown function (DUF604)
| chr5:4043057-4044583 FORWARD LENGTH=1326
Length=1326
Score = 2002 bits (1084), Expect = 0.0
Identities = 1249/1328 (94%), Gaps = 13/1328 (1%)
Strand=Plus/Plus
Query 1 ATGACCCATAAACTCTTTGCGCCTCTTGACCTTACTTTCTCCTCCTCTTCATCATCTTCC 60
||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1 ATGACCCATAACCTTTTTGCGCCTCTTGACCTTAGTTTCTCCTCCTCTTCATCTTCCTCC 60
Query 61 TCGTCTTCAGTATCATTGTCCTTGCAAATTACAAGAGAGTCTCCTACAAATATCAGCCAT 120
|| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 61 TCCTCGTCAGTATCATTGTCCTTGCAAATAACAAGAGAGCCTCCAACAAATATCAGCCAT 120
Query 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATTTTTTGTCATTGTTGGTAGTACAAAGACTTGGAGATATAGGAGAGGCTACATAGAG 180
Query 181 CCTTGGTGGAGACCAAACATCACAAAAGGATATGTTTTCCTCGAAAGACCACCTGGCCGT 240
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |
Sbjct 181 CCTTGGTGGAGACCAAACATTACAAAAGGATATGTCTTCCTCGAAAGACCACCTGGCCCT 240
Query 241 GATCTCTTGCCTTGGCCT-AACCAATCTCCTCCCTTTTCTGTCAACAAAGAATCATTCAT 299
|||||||||||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct 241 GATCTCTTGCCTTGGCCTCAA-CAATCTCCTCCCTTCTCTGTCAACAAAGAGTCATTCAT 299
Query 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCTTGAGTCTTTTAAGAA 359
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 CACAAACAAATTCAAGACTCAGATCCGCCTTTTTTATTCGCTTCAAGAGTCTTTTAAGAA 359
Query 360 GGCTTCCAAAGAGACAAGATGGTTTGTGATAGCAGATGATGATACTCTCTTCTTCTTGGA 419
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 360 GGCGTCCAAAGAGACAAGATGGTTTGTGATAGGAGATGATGATACTCTCTTCTTCTTGGA 419
Query 420 CAATTTGGTCAAAGCTCTTGACAGGTATGACCACAAGAAGCACTATTACATCGGAATGAA 479
||||||||| |||||||| ||| | ||| |||||||||||||||||||| ||||||||||
Sbjct 420 CAATTTGGTGAAAGCTCTCGACCGATATAACCACAAGAAGCACTATTACGTCGGAATGAA 479
Query 480 CTCGGAAAACGTTTGGTCCAACGCGATTTTCGCTTTCGACATGGGATATGGAGGCGGCGG 539
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 480 CTCCGAAAACGTTTGGTCCAACGCGATTTTCGCTTTTGACATGGGATATGGAGGCGGCGG 539
Query 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 ATACGCATTGAGCTATCCAACCGTAGTAACACTTCTCAGCAACATGGAAGAATGTATCAA 599
Query 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAGATACCTTGGAGTTTACAGCGATCTTCTCTCATTTCGTTGCTTGGCCGACTTGGGAAT 659
Query 660 TGATCTTACTTTAGAGAAAGGAATGCACCAGATTGATCTACACGGTGACATATCAGGTCT 719
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 660 TGATCTTACTTTAGAGAAAGGCATGCACCAGAATGATCTACACGGTGACATATCAGGTCT 719
Query 720 CTTATCAGCTCATCCACAGTCTCCTCTTATCAGCCTTCACCATTTCGATGTCATAGACCC 779
|||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 720 GTTATCAGCTCATCCTCAGTCTCCTCTTATCAGCCTCCACCATTTCGATGTAATAGACCC 779
Query 780 GATTTTTCCAGGCATGACCCGCCAGCAATCCGTGAACCACCTCATGAAAAC-G-GAT--C 835
||| || |||||||||| |||||||||||||||||||||||||||| |||| | || |
Sbjct 780 GATATTCCCAGGCATGAACCGCCAGCAATCCGTGAACCACCTCATGGAAACCGCGAAAAC 839
Query 836 --A--A-TCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGAATATAACTGGTCAGT 890
| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 840 CGACCAGTCCCGTGTCTTGCAACAAACAATATGTTACCAAAGAGGATATAACTGGTCAGT 899
Query 891 CTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATTCCCAAGAAACCACCT 950
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 900 CTCTGTCTCTTGGGGCTACTCAGTCCACATTTACCAATCTATATACCCAAGAAGCCACCT 959
Query 951 AAAACGCCCTCTCGAAACATTCCGACCATGGAAAAATGTTAAAATACCGGCGTATACATT 1010
|||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||
Sbjct 960 GAAACGCCCTCTCGAAACATTCCGACCATGGAAGGATGTTAGAATACCGGCGTATGGATT 1019
Query 1011 TAACACTAGACGGGTCACGAAGGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGAGTC 1070
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1020 TAACACTAGACGGGTGACGAATGATCCTTGCGAAATGCCTCGTCAGTTTTTCTTTGATTC 1079
Query 1071 GGTTGTGGAGGACAAGAACCAAAGCTTAGTAACTACCATGTACAAGATAAAAATAGAAAG 1130
|||||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||
Sbjct 1080 AGTTGTGGAAGACAAGAACCAAAGCTTGGTAACTACCATCTACAAGATGAAAATGGAAAG 1139
Query 1131 GAGATTGCCTCCTTGTTTGCTAAATGGCAGCCATTCTTCTCGTAACATTACACAAGTCCG 1190
| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1140 GCGTTTGCCTCCTTGTTTGCTAAATGGCAACCATTCTTCTCGTAACATTACACAAGTCCG 1199
Query 1191 AGTCATTGCTACTACTATGCACAAGATGGGCGAAGGAATCGAATGTTGCGATGTGCAATA 1250
||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 1200 AGTCATTGCTACTACTATGCACAAGATGGTTGAGGGAATCGAATGTTGCGATGTGCAAAA 1259
Query 1251 TGTTAACAGTACGGAGATTATGGAAGTGAAGATAAGAGCTTGTCATGA-AGATGAAGTTC 1309
||||||||||||||||||| |||||||||||||||||| ||||||| | |||||||| ||
Sbjct 1260 TGTTAACAGTACGGAGATTTTGGAAGTGAAGATAAGAGATTGTCAT-ATAGATGAAGCTC 1318
Query 1310 TTGCTTAG 1317
||||||||
Sbjct 1319 TTGCTTAG 1326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5