BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488102
Length=2770
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12850.1 | Symbols: | CCCH-type zinc finger protein with AR... 4209 0.0
> AT5G12850.1 | Symbols: | CCCH-type zinc finger protein with
ARM repeat domain | chr5:4056187-4059580 FORWARD LENGTH=2773
Length=2773
Score = 4209 bits (2279), Expect = 0.0
Identities = 2632/2796 (94%), Gaps = 49/2796 (2%)
Strand=Plus/Plus
Query 1 GGTCACACCAGTTACCCTCTCATCCGTTTTCGtttttttttttCCTCTCTTTCAAAAATC 60
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 1 GGTCACACCAGTTACCCTCTCATCCGTTTTCG-TTTTTTTTTT-CTCTCTTTCAAAAATC 58
Query 61 TCTCAGCTGAGG-TGATCGATCTTCTTC-TCACTCTT--T-A-GATTT-G-TTCtttttt 112
|||||||||||| ||||||||||||||| || |||| | | ||| | || | ||
Sbjct 59 TCTCAGCTGAGGTTGATCGATCTTCTTCTTC-TTCTTCCTCACTCTTTAGATT-TGTTCC 116
Query 113 ttttGCATTTTACACTTTTGGATCTGAAAATGTGGTTCTCTGTTTCGGCCATTACCGTTT 172
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 117 TTTTGCATTTTACACTTTTGGATCTGAAAATGTGGTTCTCTGTTTCGCCCGTTACCGTTT 176
Query 173 AGATTCAGTTCTGTCCTTCTTTC-TA-CCGATCGCTTGTTTTGG--T-TGATTGTTTCAG 227
|||||||||||||| || |||| || ||||||||||| || || | ||| | ||| |
Sbjct 177 AGATTCAGTTCTGT--TTTTTTCTTACCCGATCGCTTGATTCGGACTGTGA-TCTTT--G 231
Query 228 ATCTTTTTTCATCTCCAGTTCCGTGAAGGATGTGTGGTCTTGCTAAGAAGCTGGATACAG 287
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 232 ATCTTTTTTCTTCTCCAGTGCCGTGAAGGATGTGTGGTCTTGCTAAGAAGCTGGATATAG 291
Query 288 ATAATACTTTGACATCACTTTCAGACCAAGAGAATGAATCTTTGGCCAAATCCATGAATG 347
| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 292 AGGATACTTTGACATCACTGTCAGACCAAGAGAATGAATCTTTGGCCAAACCCATGAATG 351
Query 348 ATGTTGCTGAGTGGGAACATTCGTTTTCTGCCTTGCTTGAGTTTGCTGCTGACAACGATG 407
||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 352 ATGCTGCTGAATGGGAACATTCGTTTTCTGCCTTGCTTGAGTTTGCTGCAGACAACGATG 411
Query 408 TGGATGGGTTTAAGCGGCAACTCTCTGTTGTGTCTTGTATCAACCAGATGGGTCTTTGGT 467
|||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 412 TGGAGGGGTTTAGGCGGCAACTCTCTGATGTGTCTTGTATCAACCAGATGGGTCTTTGGT 471
Query 468 ACAGACGCCAGAGGTTTGTTAGAAGAATGGTTCTTGAGCAAAGAACCCCGCTGATGGTTG 527
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ACAGACGGCAGAGGTTTGTTAGAAGAATGGTTCTTGAGCAAAGAACCCCGCTGATGGTTG 531
Query 528 CTTCGATATATGGGAGTTTAGATGTTGTGAAGTTTATTCTTTCTTTCCCTGAAGCGGAGT 587
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 532 CTTCGTTATATGGGAGTTTAGATGTTGTGAAGTTTATTCTTTCTTTCCCGGAAGCGGAGT 591
Query 588 TGAATCTGTCTTGTGGTCCAGATAAAAGTACTGCTCTTCATTGCGCTGCTTCTGGTGCTT 647
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TGAATCTGTCTTGTGGTCCTGATAAAAGTACTGCTCTTCATTGCGCTGCTTCTGGTGCTT 651
Query 648 CTGTGAATTCCTTGGATGTTGTCAAGTTGCTTCTGAGTGCT-GGAGCAGATCCTAATATC 706
|||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||
Sbjct 652 CTGTGAATTCCTTGGATGTTGTCAAGTTGCTTTTGAGTG-TAGGAGCAGATCCTAATATC 710
Query 707 CCTGATGCTCATGGGAATCGTCCTGTTGATGTTCTTGTTGTTTCTCCGCACGCTCCTGGT 766
|||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 711 CCTGATGCTCATGGAAATCGTCCTGTTGATGTTCTTGTTGTGTCTCCACACGCTCCTGGT 770
Query 767 TTTAGAACCATCCTTGAAGAGATCTTGAAGAAAGATGAGATTATATCTGAGGATCTGCAT 826
|| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 771 TTGAGAACCATCCTTGAAGAGATCTTGAAGAAAGACGAGATTATATCTGAAGATCTGCAT 830
Query 827 GCGTCTTCATCTAGCTTGGGATCAAGTTTCCGGTCTCTCTCATCATCACCAGATAATGGC 886
|| || ||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 831 GCCTCGTCATCTAGCTTGGGATCAAGTTTCCGGTCTCTCTCATCATCCCCTGATAATGGT 890
Query 887 TCCTCGTTGCTCTCTTTAGATTCAGTATCCTCTCCGACTAAGCCAAACGGTACTGATGTG 946
|||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 891 TCCTCGTTACTCTCCTTAGATTCAGTATCCTCTCCGACTAAGCCACACGGTACTGATGTA 950
Query 947 ACTTTCGCATCAGAGAAAAAAGAGTACCCAATTGATCCATCATTGCCCGACATCAAAAGT 1006
||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 951 ACTTTCGCATCAGAGAAGAAAGAGTACCCAATTGATCCATCATTGCCTGATATCAAAAGC 1010
Query 1007 GGGATTTATTCCACAGATGAGTTTCGTATGTTTTCGTTTAAGATCCGCCCGTGTTCTCGA 1066
||||||||||| || ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 1011 GGGATTTATTCAACCGATGAGTTTCGTATGTTCTCGTTCAAGATCCGCCCATGTTCTCGA 1070
Query 1067 GCATATTCCCATGACTGGACCGAATGTCCATTTGCACACCCAGGTGAGAATGCTAGGAGA 1126
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1071 GCATATTCCCATGACTGGACTGAATGTCCATTTGCACACCCAGGTGAGAATGCAAGGAGA 1130
Query 1127 AGAGACCCGAGGAAGTTTCACTATACCTGTGTTCCATGTCCGGATTTCAAGAAGGGATCC 1186
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||
Sbjct 1131 AGAGACCCGAGGAAGTTTCACTATACGTGTGTTCCATGCCCGGATTTTAAGAAAGGATCC 1190
Query 1187 TGTAAGCAAGGCGATATGTGTGAATATGCTCATGGAGTGTTTGAATGCTGGCTACACCCT 1246
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1191 TGTAAGCAAGGTGATATGTGTGAATATGCTCATGGGGTTTTTGAATGCTGGCTACACCCT 1250
Query 1247 GCTCAATACAGAACACGATTGTGCAAGGATGGGATTGGCTGCAACCGAAGGGTTTGCTTC 1306
||||| ||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 1251 GCTCAGTACAGAACACGATTGTGCAAGGACGGAATGGGTTGCAACCGAAGGGTTTGCTTC 1310
Query 1307 TTTGCTCACGCAAATGAAGAGTTGCGTCCTTTGTATCCTTCCACTGGATCCGGATTGCCA 1366
||||||||||||||||| ||||||||||| ||||| |||||||| ||||| |||||||||
Sbjct 1311 TTTGCTCACGCAAATGAGGAGTTGCGTCCCTTGTACCCTTCCACAGGATCTGGATTGCCA 1370
Query 1367 TCTCCTCGGGCTTCTTCTGCTGTTTCTGCCTCTACTATGGACATGGCGTCAGTTTTGAAC 1426
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1371 TCTCCTCGGGCTTCGTCTGCTGTTTCCGCCTCTACTATGGACATGGCGTCAGTTTTGAAC 1430
Query 1427 ATGTTACCAGGCTCACCATCTGCTGCTCAACATTCGTTCACCCCACCAATATCTCCTTCT 1486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 ATGTTACCAGGCTCACCATCTGCTGCTCAACATTCGTTCACCCCACCAATATCTCCTTCT 1490
Query 1487 GGAAATGGTAGTATGCCCCATTCATCGATGGGTTGGCCTCAACAGAACATACCGGCGTTG 1546
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1491 GGAAATGGTAGTATGCCCCATTCATCGATGGGTTGGCCTCAGCAGAACATACCGGCGTTG 1550
Query 1547 AATCTTCCTGGAAGCAATATCCAGTTGAGTCGTCTGAGATCTTCTCTCAATGCTAGAGAT 1606
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1551 AATCTTCCTGGAAGCAATATCCAGTTGAGTCGTCTGAGATCTTCTCTTAACGCTAGAGAT 1610
Query 1607 ATTCCTTCTGAGCAGCTTAGCATGCTGCATGAGTTTGAAATGCAACGTCAGCTTGCTGGC 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 ATTCCTTCTGAGCAGCTTAGCATGCTGCATGAGTTTGAAATGCAACGTCAGCTTGCTGGC 1670
Query 1667 GATATGCACAGTCCACGCTTTATGAATCATTCTGCTCGCCCCAAGACACTGACCCCTTCA 1726
|||||||||||||||||||||||||||||||| ||||| || |||||||||| |||||||
Sbjct 1671 GATATGCACAGTCCACGCTTTATGAATCATTCCGCTCGTCCTAAGACACTGAACCCTTCA 1730
Query 1727 AATCTGGAGGAACTGTTCTCAGCTGAGGTTGCATCTCCTCGTTTCTCTGATCAACTTGCT 1786
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1731 AATCTGGAGGAACTCTTCTCAGCTGAGGTTGCATCTCCTCGTTTCTCTGATCAACTTGCT 1790
Query 1787 GTCTCATCTGTTCTATCGCCTTCCCACAAGTCCGCGCTTCTTAATCAACTGCAGAATAAT 1846
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1791 GTTTCATCTGTTCTATCGCCTTCCCACAAGTCCGCGCTTCTTAATCAGCTGCAGAATAAT 1850
Query 1847 AAGCAGAGCATGCTTTCTCCTATCAAGACAAATCTAATGTCTTCTCCAAAGAATGTGGAG 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 AAGCAGAGCATGCTTTCTCCTATCAAGACAAATCTAATGTCTTCTCCAAAGAATGTGGAG 1910
Query 1907 CAACATTCTCTTCTGCAGCAAGCCTCGTCACCTCGAGCCGGGGAGCCTATTTCCCCAATG 1966
|||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||
Sbjct 1911 CAACATTCTCTTCTGCAGCAAGCCTCGTCACCCCGAGGCGGAGAGCCTATTTCCCCAATG 1970
Query 1967 AACGCTCGAATGAAACAGCAGCTACATTCACGTAGCCTCAGCTCCCGTGATTTTGGATCC 2026
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 1971 AATGCTCGAATGAAACAGCAGCTACATTCACGCAGCCTAAGCTCCCGTGATTTTGGATCT 2030
Query 2027 AGTCTGCCCCGTGATTTAATGCCGACTGATTCTGGTTCGCCCCTAAGTCCATGGTCAAGT 2086
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2031 AGTCTGCCCCGTGATTTAATGCCGACTGATTCTGGTTCGCCATTAAGTCCATGGTCAAGT 2090
Query 2087 TGGGACCAGACCCATGGAAGCAAGGTGGATTGGTCAGTCCAATCAGATGAGTTAGGTCGG 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091 TGGGACCAGACCCATGGAAGCAAGGTGGATTGGTCAGTCCAATCAGATGAGTTAGGTCGG 2150
Query 2147 TTGAGAAAATCTCATTCCTTGGCTAATAACCCAAACAGGGAAGCAGATGTTTCATGGGCT 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2151 TTGAGAAAATCTCATTCCTTGGCTAATAACCCAAACAGGGAAGCAGATGTTTCATGGGCT 2210
Query 2207 CAGCAGATGTTAAAAGACTCTGCATCACCTAGGAACGGGAACCGAGTCGTGAACATGAAC 2266
||||||||||||||||||||| |||||||||||||||| ||||| || |||||||||||
Sbjct 2211 CAGCAGATGTTAAAAGACTCTTCATCACCTAGGAACGGAAACCGTGTTGTGAACATGAAT 2270
Query 2267 GGTGCAAGGCCATTGACTCAAGGTGGTTCAAGTGTGAATCCTCGCCACAGTGAGACTCGT 2326
||||||||||||||||||||||||||||| ||||||||||||| | ||||||| ||||||
Sbjct 2271 GGTGCAAGGCCATTGACTCAAGGTGGTTCGAGTGTGAATCCTCACAACAGTGACACTCGT 2330
Query 2327 GAGAGCGACATTCTCGATGCGTGGCTTGAGCAGCTGCAGCTAGATCGCTGAGACTCAGG- 2385
|||||||||||||| |||||||||||||| |||||||| ||||||||||||| |||||
Sbjct 2331 GAGAGCGACATTCTTGATGCGTGGCTTGAACAGCTGCACCTAGATCGCTGAGCCTCAGCT 2390
Query 2386 G-GAGAGAGAGGTTCACATTTCTGTGAAGCTGTGAAACTGATGATTCGTTTATTTTATTA 2444
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2391 GCGAGAGAGAGGTTCACATTTCTGTGAAGCTGTGAAACTGATGATTCGTTTATTT-ATTA 2449
Query 2445 TTCAAGAAAGCAAACGGAA-CAAAT------TCCGGGTAAGCGCTTTTTCGATTCTAATA 2497
||||||||||||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 2450 TTCAAGAAAGCAAACGGAAACAAAAGCAAACTCCGGGTAAGCT-TTTTTCGATTCTAATA 2508
Query 2498 ACCCTAAAAGGCTCAGTTTTTTCAGGCTTCTTTCTGAAATTTCTTTACTTCCTTATTTTT 2557
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2509 ACCCTAAAAGGCTCAGTTTTTTCAGGCTTCTTTCTGAAATTTCTTTACTTTCTTATTTTT 2568
Query 2558 ATCACCTCATTAAATTAATTATTGTATC-TCT--GTTGTAACAATGGCCAAAGTGTTCCT 2614
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
Sbjct 2569 ATCACCTCATTAAATTAATTATTGTATCATCTCTGTTGTAACAATGGCCAAAGTG--C-- 2624
Query 2615 CTTTGCCTCTATTACTTCCCGTATTTCTGATTTACATTTTTTGTATTCTCTCAGTTTGTC 2674
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 2625 ----GCCTCTATTACTTCCCGGATTTCTGATTTACATTTTTTGTATCCTCTCAGTTTGTC 2680
Query 2675 AATTGTTTCTAATATCTCTTTCATATTTGTCAAAGAACATTGTATGAGAAATAATAATAA 2734
|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 2681 AATTGTTTCTAATATCTCCTTCATATTTGTCAAAGAACACTGTATGAGAAATAATAA--- 2737
Query 2735 CATATTGTTTCAGCTAATAAGATTCATTCATTTCCT 2770
||||||||||||||||||||||||||||||||||||
Sbjct 2738 CATATTGTTTCAGCTAATAAGATTCATTCATTTCCT 2773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 137607924649
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5