BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488106 Length=436 Score E Sequences producing significant alignments: (Bits) Value AT5G12880.1 | Symbols: | proline-rich family protein | chr5:40... 608 1e-173 > AT5G12880.1 | Symbols: | proline-rich family protein | chr5:4068519-4068962 REVERSE LENGTH=444 Length=444 Score = 608 bits (329), Expect = 1e-173 Identities = 408/444 (92%), Gaps = 13/444 (3%) Strand=Plus/Plus Query 1 CATCAATTTCTCTTGTGCGATTCGAAGATGAAACGTTTATGGCCTACACGCCTCATCCTC 60 ||||||| |||||| |||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1 CATCAATCTCTCTTTTGCGATTCGAAGATGAGACGTTCATGGCCTACACGCCTCATCCTC 60 Query 61 CTGATGGTTCTCACCGTCATCATCACCATGATTGCCGCAGCGTATGGTTATTCCTCTGTC 120 || ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 61 CTTATGGTTCTCACCGTCGTCATCACCATGATTGCCGCAGCTTATGGTTATTCCTCTGTC 120 Query 121 TCATCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACCACT 180 || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 TCGTCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACAACT 180 Query 181 TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTTACAGATTCAGATTCTGCAGTTTAT 240 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 181 TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTCACAGATTCAGATTCTGCAGCTTAT 240 Query 241 GATCGATGAACACAGTGCAGTACGTCAATTGATCTGAGTTCTATTTTTACA----A-CTA 295 | ||||||||||||| |||||||||||||||||||||||| |||||||| | | ||| Sbjct 241 GTTCGATGAACACAGGGCAGTACGTCAATTGATCTGAGTTTTATTTTTATATGTTAACTA 300 Query 296 TTCttttttatttttgatttttGATGTAACATAATCTAAATTAATGGCCTGTTTTCCAAG 355 |||||||| ||||||||||| |||||||| | || |||||||||| |||||||||||| Sbjct 301 TTCTTTTTC-TTTTTGATTTT-GATGTAACGT--TCAAAATTAATGGACTGTTTTCCAAG 356 Query 356 TAACCGTGAGAAAAGTATGCAGATTTCGATTGTT--C-ACGTTATGTAAGATGAAATAAT 412 |||||||||||| |||||||||| ||||||||| | | |||||||||||||||||||| Sbjct 357 CAACCGTGAGAAAGGTATGCAGATATCGATTGTTTTCTA-GTTATGTAAGATGAAATAAT 415 Query 413 TAACAGAATTGTTGCAGTAGTTAT 436 ||||||||||||||| |||||||| Sbjct 416 TAACAGAATTGTTGCGGTAGTTAT 439 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20710312588 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5