BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488106

Length=436
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12880.1 | Symbols:  | proline-rich family protein | chr5:40...   608    1e-173


> AT5G12880.1 | Symbols:  | proline-rich family protein | chr5:4068519-4068962 
REVERSE LENGTH=444
Length=444

 Score =  608 bits (329),  Expect = 1e-173
 Identities = 408/444 (92%), Gaps = 13/444 (3%)
 Strand=Plus/Plus

Query  1    CATCAATTTCTCTTGTGCGATTCGAAGATGAAACGTTTATGGCCTACACGCCTCATCCTC  60
            ||||||| |||||| |||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  1    CATCAATCTCTCTTTTGCGATTCGAAGATGAGACGTTCATGGCCTACACGCCTCATCCTC  60

Query  61   CTGATGGTTCTCACCGTCATCATCACCATGATTGCCGCAGCGTATGGTTATTCCTCTGTC  120
            || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct  61   CTTATGGTTCTCACCGTCGTCATCACCATGATTGCCGCAGCTTATGGTTATTCCTCTGTC  120

Query  121  TCATCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACCACT  180
            || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  TCGTCATCAAAACATAAGTTCCCTCATTACAAGTACAAAGCTCCATCTCCTCCAACAACT  180

Query  181  TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTTACAGATTCAGATTCTGCAGTTTAT  240
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct  181  TATTCTCCTTACCGTTATTTCTCGCCGCCTCCGGTCACAGATTCAGATTCTGCAGCTTAT  240

Query  241  GATCGATGAACACAGTGCAGTACGTCAATTGATCTGAGTTCTATTTTTACA----A-CTA  295
            | ||||||||||||| |||||||||||||||||||||||| |||||||| |    | |||
Sbjct  241  GTTCGATGAACACAGGGCAGTACGTCAATTGATCTGAGTTTTATTTTTATATGTTAACTA  300

Query  296  TTCttttttatttttgatttttGATGTAACATAATCTAAATTAATGGCCTGTTTTCCAAG  355
            ||||||||  ||||||||||| |||||||| |  || |||||||||| ||||||||||||
Sbjct  301  TTCTTTTTC-TTTTTGATTTT-GATGTAACGT--TCAAAATTAATGGACTGTTTTCCAAG  356

Query  356  TAACCGTGAGAAAAGTATGCAGATTTCGATTGTT--C-ACGTTATGTAAGATGAAATAAT  412
             |||||||||||| |||||||||| |||||||||  | | ||||||||||||||||||||
Sbjct  357  CAACCGTGAGAAAGGTATGCAGATATCGATTGTTTTCTA-GTTATGTAAGATGAAATAAT  415

Query  413  TAACAGAATTGTTGCAGTAGTTAT  436
            ||||||||||||||| ||||||||
Sbjct  416  TAACAGAATTGTTGCGGTAGTTAT  439



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20710312588


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5