BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488108
Length=2002
Score E
Sequences producing significant alignments: (Bits) Value
AT5G12900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 3153 0.0
> AT5G12900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G12330.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:4071919-4074619 REVERSE LENGTH=2095
Length=2095
Score = 3153 bits (1707), Expect = 0.0
Identities = 1929/2031 (95%), Gaps = 36/2031 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCTCTTCTTCACACACACAGAGACATCATCCTCATCACACCCTATTC-CTTGCA 59
||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||
Sbjct 27 TCTCTCTCTCTTCTTCACACACACAGAGACATCATCCTCTTCACACCCTTTTCTTTTGCA 86
Query 60 CAATCGCATTCACTAtctcttctctctcttttgtgtcacatccttctc-t-tc-tc---- 112
|||||||||||||||||||||||||||||||||||||||||||||||| | || ||
Sbjct 87 CAATCGCATTCACTATCTCTTCTCTCTCTTTTGTGTCACATCCTTCTCTTCTCTTCTAAG 146
Query 113 ttctaatcttg---t-tcttgttctgccatggcttcttctGAAACAAGAATGAACAAGGC 168
||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 147 TTCTAATCTTGTACTATCTTGTTCTACCATGGCTTCTTCTGAAACAAGAATGAACAAGGC 206
Query 169 AAGAGAAAAAGAAGAAGCCATAGCAAATGGAGTGAAGCTGAGAGCACTTCAAGCGAGTCT 228
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 207 AAGAGAAAAAGAAGAAGCCATAGCAAATGGAGTGAAGTTGAGAGCACTTCAAGCGAGTCT 266
Query 229 TATGCAGATGAAGTCAAGCCCATCTTCCAATTACAGTCTCAGAAACCCTTCTTCTTCTTC 288
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 267 TATGCAGATGAAGTCAAGCCCATCTTCCAATTACAGTCTCAGAAACCCTTCTTCCTCTTC 326
Query 289 TGCTGCTTCACCTGCTTCTCGTCCTCTCCCTAACCTCTCTGCTCATGATTACCCTGTTTT 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TGCTGCTTCACCTGCTTCTCGTCCTCTCCCTAACCTCTCTGCTCATGATTACCCTGTTTT 386
Query 349 CACTCCTAGCTATGAAGATGAGCCTGTGTCTGCATTTCATCACAAGAATCTCACTTTATC 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CACTCCTAGCTATGAAGATGAGCCTGTGTCTGCATTTCATCACAAGAATCTCACTTTATC 446
Query 409 TGAGACTTGGGATGAAGATGGTGTTGGTTTAGTAGATGGAGATACTTATCTCTCTGATTC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 TGAGACTTGGGATGAAGATGGTGTTGGTTTAGTAGATGGAGATACTTATCTCTCTGATTC 506
Query 469 GTACAAAACCTCAACTTCAAGAAAGACTGTGATG---CCTAATCAAGATTCTCATCATCA 525
||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 507 TTACAAAACCTCAACTTCAAGAAAGACTGTGATGATGCCTCATCAAGATTCTCATCATCA 566
Query 526 TGTTTACACGATGTCGGACGCTCTCAGGTCTCCACCATTACATTTTTATACAACCGGTAG 585
||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 567 TGTTTACACTATGTCGGACGCTCTCAGATCTCCACCGTTACATTTTTATACAACCGGTAG 626
Query 586 AAGCAACAATGGCTCGGTTGACTTTAGATCGGTCTCTTCTTGCAATGACTACAATAAACA 645
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AAGCAACTGTGGCTCGGTCGACTTTAGATCGGTCTCTTCTTGCAATGACTACAATAAACA 686
Query 646 AAGAGGTTTCGATACCAAGAGCTTGAAGAATTCTAATCTTGTTGTGCCCTTGACGGATTC 705
|| ||||||||| || ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 687 AAAAGGTTTCGACACGAAGAGCTTGAAGAGCTCTAATCTTGTTGTGCCCTTGACGGATTC 746
Query 706 GCACTCTGCTGTTGTTTCTTCTCAGCCAAGAAACCGTGGAGGAAGAGTGATGTCTTGGTT 765
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 747 GCACTCTGCTGTTGTTTCTTCTCAGCCAAGAAACCGTGGAGGTAGAGTAATGTCTTGGTT 806
Query 766 ATTCCCTAAGTTAAAGA-GAAAGCAAAAGAGTAATTCAATCTTTAACTCACCTAGTAGAA 824
||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||| ||
Sbjct 807 ATTCCCTAAGTTAAAGAAGAAA-CAAAAGAGTAATTCGATCTTTAATTCACCTAGTATAA 865
Query 825 CTGAGAAATCAGAGGAAGTTTCCGAGGTGTTGAAGGATTCAGGT---G-T-T-GAGAAGT 878
||||||| |||||||||||||| ||||||||||||||||| ||| | | | |||||||
Sbjct 866 CTGAGAAGTCAGAGGAAGTTTCTGAGGTGTTGAAGGATTCTGGTTCTGGTGTTGAGAAGT 925
Query 879 TGAAAAGAGAATTGATGGAAGCAAACAGAAGTAGGGATGCTGCGTTAACACAAGTCTTAG 938
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 926 TGAAGAGAGAATTGATGGAAGCAAACAGAAGTAGGGATGCTGCGTTAACACAAGTCTCAG 985
Query 939 AGATGAAATCTTCATTGGGAGAGTTAAGTGAGAAGCTTCAGTACTTGGAAAGTTACTGTG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 986 AGATGAAATCTTCATTGGGAGAGTTAAGTGAGAAGCTTCAGTACTTGGAAAGTTACTGTG 1045
Query 999 ACAATTTAAAGAAAGCTTTGAGAGAAGCAACAGAAGTAGTGTCACAGGAGAATAGTGTTG 1058
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1046 ACAATTTAAAGAAAGCTTTGAGAGAAGCAACAGAAGTAGTGTCACAGGAGAATAGTGGTG 1105
Query 1059 GAAGAAGCTCAGGGAAGAAGAACTCAGAGATGCCAGTGAGTGAAGAAGTGATGGTTGAAG 1118
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1106 GAAGAAGCTCAGGGAAAAAGAACTCAGAGATGCCAGTGAGTGAAGAAGTGATGGTTGAAG 1165
Query 1119 GGTTCTTGCAGATTGTATCGGAAGCAAGATTATCGATAAAGCAATTCTTGAAAACATTAG 1178
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1166 GGTTCTTGCAGATTGTATCAGAAGCAAGATTATCGATAAAGCAGTTCTTGAAAACATTAG 1225
Query 1179 TTTCAGAGATCGACGAAGAAGACTCTACTCTAATTGGTAACATCAACACTCTCCTTCAAC 1238
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1226 TTTCAGAGATTGATGAAGAAGACTCGACTCTAATTGGTAACATCAACACTCTCCTTCAAC 1285
Query 1239 CCCACAACTTATCATTCACCTCTAAGTACTCCAAAATCATTCAGTACCACTTAGAAGCGA 1298
| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 1286 CTCACAACTTATCATTCACTTCTAAGTACTCCAAGATCATTCAGTACCACTTAGAAGCAA 1345
Query 1299 TCATAAGCCAATCAGTATACCAAGACTTTGAGAACTGCGTTTTCCAGAAGAACGGTAAGC 1358
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1346 TCATAAGCCAATCAGTATACCAAGACTTTGAGAACTGCGTATTCCAGAAGAACGGTAAGC 1405
Query 1359 CGAAACTGCTTGATCCGGAACAAGATAGACAAGCGAATTTCTCGTCATTTGCTTCTTTGA 1418
|||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||
Sbjct 1406 CGAAACTGCTTGATCCGGAACAAGATCGACAAGCGAACTTCTCGTCCTTTGCTTCCTTGA 1465
Query 1419 GAAACTTGAGCTGGAACGAGGTATTGAAAAAGGGTACAAAATACTACAGTGATGAGTTCA 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 GAAACTTGAGCTGGAACGAGGTATTGAAAAAGGGTACAAAATACTACAGTGATGAGTTCA 1525
Query 1479 GTAGATTCTGCGATGAGAAGATGAGTCTGATCATTACAACATTGAATTGGACAAGACCTT 1538
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1526 GTAGATTCTGCGATGAGAAGATGAGTTTGATCATTACAACATTGAATTGGACAAGACCTT 1585
Query 1539 GGTCAGAACAAATGCTTCAAGCATTCTTTGTGGCTGCAAAGTGTGTATGGTTGCTTCATT 1598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1586 GGTCAGAACAAATGCTTCAAGCATTCTTTGTGGCTGCAAAATGTGTATGGTTGCTTCATT 1645
Query 1599 TGCTTGCCTTCTCGTTCAGTCCAGCGTTAGGGATCTTGAGAGTTGAGGAGAACAGAGAGT 1658
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 1646 TGCTTGCCTTCTCGTTCAATCCAGCGTTAGGGATATTGAGAGTTGAGGAGAACAGAGAGT 1705
Query 1659 TTGAATCGGGTTTTATGGAAGATATGGGTGCAGATAGGCAGAGATCAGCATCGTCCCGTG 1718
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1706 TTGAATCAAGTTTTATGGAAGATATGGGTGCAGATAGGCAGAGATCAGCATTGTCCCGTG 1765
Query 1719 GACCGGCACGGGTTAAGGTTATGGTGATGCCTGGGTTTTATGTTCAAGATAGGGTTTTGA 1778
||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1766 GACCGGCACGGGTTAAGGTTATGGTAATGCCTGGGTTTTATGTTTTAGATAGGGTTTTGA 1825
Query 1779 GATGTAAGGTCCTTTGCAGGTACAAGTCATTGGGCTGAACTGAAGAGAGTCACACTCACT 1838
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1826 GATGTAAGGTTCTTTGCAGGTACAAGTCATTGGGCTGAACTGAAGAGAGTCACACTCACT 1885
Query 1839 CTAGTCTAATCAAGATTGATTGCTTCTTAATTAACTTTTCTTATTGTTAATCTCTTGTGG 1898
||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1886 CTAGTCTAATCAAAATTGATTGGTTCTTAATTAACTTTTCTTATTGTTAATCTCTTGTG- 1944
Query 1899 TTTCTA-TACCTAGGCTTC-----AGTGATCTTTTTACATTTGTCTTTGTTAAGAAT-AT 1951
||||| ||||||||||| | || |||||||||| ||||||||||||| ||
Sbjct 1945 TTTCTTCTACCTAGGCTTTTTTTTACTGGTCTTTTTACA-----CTTTGTTAAGAATTAT 1999
Query 1952 TATAGGTTTTTAATTTTTGTCAAATAGTAGTTGTCAAGGAGATTTTGTATT 2002
||||||||||||| | |||||||||| || |||||||||||||||||||||
Sbjct 2000 TATAGGTTTTTAAATATTGTCAAATACTACTTGTCAAGGAGATTTTGTATT 2050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 99196276920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5