BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488115

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G12990.1 | Symbols: CLE40 | CLAVATA3/ESR-RELATED 40 | chr5:4...   388    9e-108


> AT5G12990.1 | Symbols: CLE40 | CLAVATA3/ESR-RELATED 40 | chr5:4109234-4109768 
REVERSE LENGTH=243
Length=243

 Score =  388 bits (210),  Expect = 9e-108
 Identities = 232/243 (95%), Gaps = 0/243 (0%)
 Strand=Plus/Plus

Query  1    ATGGCGGCGATGAAATACAAAGGAAGTGTTTTCATCATATCAGTCATCCTTCTTCTTTCG  60
            |||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct  1    ATGGCGGCGATGAAATACAAAGGAAGCGTTTTTATCATATTAGTCATCCTTCTTCTTTCG  60

Query  61   TCCCCACTACTTGCTCACTCTTCTTCTACAAAATCTTTCTTTTGGTTAGGAGAAACACAA  120
            ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  61   TCCTCACTACTTGCTCACTCTTCTTCTACAAAATCCTTCTTTTGGTTAGGAGAAACACAA  120

Query  121  GATACGAAAACCATGAAAAAGGAGAAGGAGATTAACGGAGGAACAGCTAATGAAGTTGAA  180
            ||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||
Sbjct  121  GATACGAAAGCCATGAAAAAGGAGAAGAAGATTGATGGAGGAACAGCTAATGAAGTTGAA  180

Query  181  GAAAGACAAGTTCCGACTGGATCCGACCCTCTTCATCATAAACACCTTCCTTTTACTCCA  240
            |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  181  GAAAGACAAGTTCCAACTGGATCCGACCCTCTTCATCATAAACACATTCCTTTTACTCCA  240

Query  241  TAG  243
            |||
Sbjct  241  TAG  243



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11008637031


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5