BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488118
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13020.1 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-li... 2351 0.0
> AT5G13020.1 | Symbols: | Emsy N Terminus (ENT)/ plant Tudor-like
domains-containing protein | chr5:4129359-4132864 REVERSE
LENGTH=1850
Length=1850
Score = 2351 bits (1273), Expect = 0.0
Identities = 1389/1444 (96%), Gaps = 11/1444 (1%)
Strand=Plus/Plus
Query 1 ATGGATTACCGACCTTCTGATAGTAGTGGTACAGATGATGATCTGCCTCCATCTCATCAA 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 414 ATGGATTACCGACCTTCTGATAGTAGTGGTACAGATGATGACCTGCCTCCATCTCATCAA 473
Query 61 GGTAGATATCAACGAAGCGCCAGACCTGCTGGCAATGGAAGGCCTTCAGTTCTTAATTCT 120
|||||||||||| ||| |||||||||| | || |||||||||||||||||||| ||||||
Sbjct 474 GGTAGATATCAAAGAAACGCCAGACCTACCGGGAATGGAAGGCCTTCAGTTCTCAATTCT 533
Query 121 GCTCCTTTATCACGGGTGCACAATGACATGGAAACTCAAATTCATCTCATTGAGCAAGAA 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 534 GCTCCTTTATCACGGGTGCACAATGAAATGGAAACTCAAATTCATCTCATTGAGCAAGAA 593
Query 181 GCGTATAGCTCGATACTCCGCGCATTTAAAGCCCAGTCCGATGCTATTACCTGGGAGAAA 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 GCTTATAGCTCGATACTCCGCGCATTTAAAGCCCAGTCCGATGCTATTACCTGGGAGAAA 653
Query 241 GAAAGTTTGATCACTGAACTCAGAAAAGAACTTCGGGTGTCTGATGAGGAACACAGAGAG 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 654 GAAAGTTTGATCACTGAACTCAGAAAAGAACTTCGAGTGTCTGATGAGGAACACAGAGAG 713
Query 301 CTGTTATCAAGGGTTAACGCTGATGAAATGATCAGGCGAATAAGGGAATGGAGAAAGGCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 CTGTTATCAAGGGTTAACGCTGATGAAATGATCAGGCGAATAAGGGAATGGAGAAAGGCA 773
Query 361 AACAGCCTTCAGTCCAGTGTTCCTCAGCTGGTTCATGATGCTCCGAGTCCGGCTGTATCA 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 AACAGCCTTCAGTCTAGTGTTCCTCAGCTGGTTCATGATGCTCCGAGTCCGGCTGTATCA 833
Query 421 GGATCACGTAAGAAGCAAAAGACATCACAGTCAATCGCCTCATTAGCGATGGGCCCACCA 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 834 GGATCACGTAAGAAGCAAAAGACATCACAATCAATCGCCTCATTAGCGATGGGCCCACCA 893
Query 481 TCTCCTTCTTTGCACCCTTCGATGCAACCATCGTCATCTGCACTAAGAAGGGGAGGTCCT 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 894 TCTCCTTCTTTGCACCCTTCAATGCAACCATCGTCATCTGCACTAAGAAGGGGAGGTCCT 953
Query 541 CCACCAGGTCCAAAGACCAAGAAGCCAAAGACATCAATGCAGTACCCACCTACAGGCA-T 599
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
Sbjct 954 CCACCAGGTCCAAAGACCAAGAAGCCAAAGACATCGATGCAGTACCCATCTACAGGCATT 1013
Query 600 GCCTGGAAGGCCCCAGGCTGGTGCTTTAACAAATGAACCAGGTGAATCGGGATCATATGA 659
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1014 G-CTGGAAGGCCCCAGGCTGGCGCTTTAACAAATGAACCAGGTGAATCGGGATCATATGA 1072
Query 660 CCCATTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGACGACAACCATTTCTATGAAGC 719
||| ||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct 1073 CCCGTTGGTTGGAAGGAAGGTATGGACGAAGTGGCCTGATGACAACCAATACTACGAAGC 1132
Query 720 TGTTATAACTGACTACAACCCTGTCGAGGGGCGGCATGCTTTAGTGTATGATATTAACTC 779
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1133 TGTTATAACTGACTACAACCCTGTTGAGGGGCGTCATGCTTTAGTGTATGATATTAACTC 1192
Query 780 TGCGAATGAAACTTGGGAATGGGTAAATCTTAAAGAGATATCTCCGGGAGATATCAGATG 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1193 TGCGAATGAAACCTGGGAATGGGTAAATCTTAAAGAGATATCTCCGGGAGATATCAGATG 1252
Query 840 GGAAGGTGAGGATCCTGGCG-TTTCTCGTAAAGGAGGACATCCTGGGCAAGGCCGTGGAA 898
||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1253 GGAAGGTGAAGATCCTGG-GATTTCTCGTAAAGGAGGACATCCTGGGCAAGGCCGTGGAA 1311
Query 899 CTTCAAAATCCATGGCTCGCGGTGGTCCCACAAGCAATGCGGGGGGTAGAGGTAGGGGAA 958
||||| |||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 1312 ---CAAAAACCATGGCTCGTGGTGGTCCTGCAAGCAATGCGGGTGGTAGAGGTAGGGGAA 1368
Query 959 GCATGAAGATGCAGCAACCTAAGACACAGAATGGCATTGGGAAGAAAGCTTTAGGCGAAA 1018
|||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1369 GCATGAGGATGCAGCAACCTAAGACACAGAATGGCATCGGAAAGAAAGCTTTAGGCGAAA 1428
Query 1019 TCGAAATTCTCCACACTGATACATTGATAAAAGAGGTAGAAAAAGTTTTTGGGTCAGTTA 1078
||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 1429 TCGAAATTCTCCACACTGAGACATTGTTAAAAGAGGTGGAAAAAGTTTTTGGGTCAGTTA 1488
Query 1079 ACCCCAACCCAGCAGAGGTAGAGAAGGCGAAGAGAGTGCTGAGAGATCATGAACTAGCTC 1138
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1489 ACCCCAACCCAGCAGAGGTAGAGAAGGCAAAGAGAGTGCTGAGAGATCATGAACTAGCTC 1548
Query 1139 TTATGGATGCCATCGCAAAGCTTGAAGAAATATCAGACGGAGAAAGCGGTAATATTTGAT 1198
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1549 TTATGGATGCCATCGCAAAGCTTGAAGAAATATCAGATGGAGAAAGCGGTAATATTTGAT 1608
Query 1199 -GGGGCCCTTCTAAAATCTCCTCAGATGATGGAGCTGGAGCATTAGACTTGCTAAAAGGT 1257
|||| | |||| |||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 1609 AGGGG-CTTTCT-AAATCTCCTCAGATGATGGAGCCGGAGCATTAGAGTTGCAAAAAGGT 1666
Query 1258 GTTGTAGATGGTGGTGGCAAAATGTGAATTGATGAGGGAGATTTGGAAACTTGTATGGAT 1317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1667 GTTGTAGATGGTGGTGGCAAAATGTGAATTGATGAGGGAGATTTGGAAACTTGTATGGAT 1726
Query 1318 GGCAAAATGTATTTTGTTTAGGAGGGGGATTTGATGACATTTGTGTGCCACATAACTCCA 1377
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1727 GGCAAAATGTATTTTGTTTAGGAGGGGGATTTGATGACATTTGTGTACCACATAACTCCA 1786
Query 1378 ATAACTGGATTTGGAAATTAGGGT-CTTAAGCATTGTAAAATCCATAAGACTTGATATAA 1436
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1787 AAAACTGGATTTGGAAATTAGGGTTCTTAAGCATTGTAAAATCCATAAGACTTGATATAA 1846
Query 1437 ATGT 1440
||||
Sbjct 1847 ATGT 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70983570630
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5