BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488121
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13050.1 | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloli... 1554 0.0
AT5G13030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 87.9 2e-16
> AT5G13050.1 | Symbols: 5-FCL | 5-formyltetrahydrofolate cycloligase
| chr5:4136556-4138792 REVERSE LENGTH=1271
Length=1271
Score = 1554 bits (841), Expect = 0.0
Identities = 965/1024 (94%), Gaps = 12/1024 (1%)
Strand=Plus/Plus
Query 1 TTTTGTCGTTTATGGTTTGGAATAATTTCCCTGCAG-tttttttt-ttCTTAAAGAA-AG 57
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 2 TTTTGTCGTTTATGGTTTGGAATAATTTCCCTGCAGTTTTTTTTTCTTCTTAAAGAACA- 60
Query 58 aaaaaaaaaCGGGAGCTTGAAATGATTGGAGCTCGCGTCTTTTGTATCAGCACGACAGCA 117
|||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 61 AAAAAAAAACGGGAACTTGTAATGATTGGAGCTCGCGTCTTTTGTATCACCACGACAGCA 120
Query 118 CTACAAAGATCATCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTA 177
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTACGAAGATCACCAATCTTCTTCTTCCCCAAGATCCCGACCCGACCCGTTTTCAGATTA 180
Query 178 TTATCA-C--C-CG--CAATCGTCGCCATGAGCACCACCAGCAAAAGCCAAGAGGAACTC 231
| | || | | | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 TCACCAGCTACTAGACCCATCGTCGCCATGAGCACCACCAGCAAAAACCAAGAGGAACTC 240
Query 232 GATTCCATTTTCAAGCAGAAACGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAGGCC 291
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 241 GATTCCATTTTCAAGCAGAAGCGGGTCGTGCGCTCCACTGTCCGCAAATCCCTAAAAGCC 300
Query 292 ATGGACCCTTCTCTCCGAACCCAACAAGATGAGTCCATTCAAAACACTCTTCTTGAAGCT 351
||||||||||||||||||||||||||||||||| | ||||| || ||| |||||||||||
Sbjct 301 ATGGACCCTTCTCTCCGAACCCAACAAGATGAGGCAATTCAGAAGACTGTTCTTGAAGCT 360
Query 352 CCCTGGTTCAAATCATGTAAGCGATTGTGTGCTTACATTAGCTGCAAGTCTCTCAATGAA 411
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 361 CCCTGGTTCAAATCATGTAAGGGATTGTGTGCTTACATTAGCTGCAAATCTCTCAATGAA 420
Query 412 GTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAAAATCCTGATTCAAATACTCAGAAA 471
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 421 GTCGACACTTCTAAAATCCTCTCTGAGATTCTGCAACATCCAGATTCAAATACTCAGAAA 480
Query 472 AAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGCAACATGCGTATGCTGCACATTTCT 531
||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| |||
Sbjct 481 AAGCTATATGTCCCTTGGGTGGAGGATAAGAACAGTAACATGCGCATGTTGCACATATCT 540
Query 532 CATATGGAAGACCTTATTGCAAACTCGATGAACATTTTGGAACCAGCTCCTGTTGATGCC 591
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CATATGGAAGACCTTGTTGCAAACTCAATGAACATTTTGGAACCAGCTCCTGTTGATGCC 600
Query 592 CAAGGGAATGAGCGTGAAGATGTGTTGCAAGCAGATGAACCGATAGATTTGTTCATCTTG 651
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 CAAGGGAATGACCGTGAAGATGTGTTGCAAGCAGATGAACCGATCGATTTGTTCATCTTG 660
Query 652 CCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGAC 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCAGGTCTTGCGTTTGACAGATGTGGGCGACGTTTAGGTCGTGGAGGTGGCTACTACGAC 720
Query 712 ACTTTCTTGAAGAGATACCAGGATCGTGCAAAGGAGAAGTATTGGAGATATCCACTTATG 771
||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||
Sbjct 721 ACTTTCTTGAAGAGATATCAGGACCGTGCAAAGGAGAAGGGTTGGAGATATCCACTTATG 780
Query 772 GTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGCAAGTATTCCTGTAACACCGAAT 831
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 781 GTTGCATTGTCATACTCGCCTCAAATTCTTGAGGATGGAAGTATTCCTGTAACACCTAAT 840
Query 832 GATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATTACCCCTCGTGCT 891
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 841 GATGTTCTGATCGATGCCCTTGTGACACCTTCTGGTGTGGTTCCCATCACCCCTCGTGCT 900
Query 892 ATCGAGAGAATGTGAGCTCAACAGCTTGTGTTTGGAGCTGACACTCAGATGATTCGTTAG 951
| |||||| ||||||||||| |||||||||||||||||||| ||||||| || || ||
Sbjct 901 ACCGAGAGCATGTGAGCTCAGGAGCTTGTGTTTGGAGCTGACCCTCAGATAATCCGA-AG 959
Query 952 TT-GGCGCTTGAAGGCTACATTCTGGAATTTGCTAATTCAGTATCAGCTTCTGTAGTTGC 1010
| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 960 GTCGGCGCTTGAAGGCTACATTCTGGAAGTTGCTAATTTAGTATCAGCTTCTGTAGTTGC 1019
Query 1011 CACT 1014
||||
Sbjct 1020 CACT 1023
Score = 97.1 bits (52), Expect = 3e-19
Identities = 166/215 (77%), Gaps = 32/215 (15%)
Strand=Plus/Plus
Query 1015 TCTTGTATGATGAGATATGAAAGAAGATTGA-TCCAATTGCCTCTCACCTGTTTATGCCA 1073
||||||||||| | ||||||||||||||| | |||||| | ||||||||||||||| |||
Sbjct 1056 TCTTGTATGATAAAATATGAAAGAAGATT-AGTCCAATGGTCTCTCACCTGTTTATTCCA 1114
Query 1074 TATCAA-----Gt----t--t-----t-ttttt-ATCGCACAAGATGTTACTGGTTCTTG 1115
|||||| || | | | ||||| |||||| || ||| || ||| |||||
Sbjct 1115 TATCAAGTTTTGTCGGGTAATAACAATCTTTTTAATCGCATAAAATGATATTGGCTCTTG 1174
Query 1116 GGTTCTTTTCTTGAG-----C-T-----T-TATATGTACTCAAATCTTTATTCAATGTAA 1163
||||||||| ||||| | | | ||||||||||||||||||||||||||||||
Sbjct 1175 GGTTCTTTTGTTGAGCTTCTCATGGAAATCTATATGTACTCAAATCTTTATTCAATGTAA 1234
Query 1164 AAACAAATTAGAGAAAACATCGAAGTTTTTCTTGT 1198
||||||| | ||||||| | |||||||||||||
Sbjct 1235 AAACAAAATCCTGAAAACAGCAAAGTTTTTCTTGT 1269
> AT5G13030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures;
EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s:
Uncharacterised protein family UPF0061 (InterPro:IPR003846);
Has 5046 Blast hits to 4997 proteins in 1211 species:
Archae - 8; Bacteria - 2327; Metazoa - 120; Fungi - 134;
Plants - 48; Viruses - 0; Other Eukaryotes - 2409 (source:
NCBI BLink). | chr5:4133204-4136688 FORWARD LENGTH=2141
Length=2141
Score = 87.9 bits (47), Expect = 2e-16
Identities = 59/65 (91%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 1134 TATATGTACTCAAATCTTTATTCAATGTAAAAACAAATTAGAGAAAACATCGAAGTTTTT 1193
||||||||||||||||||||||||||||||||||||| | ||||||| | ||||||||
Sbjct 2075 TATATGTACTCAAATCTTTATTCAATGTAAAAACAAAATCCTGAAAACAGCAAAGTTTTT 2016
Query 1194 CTTGT 1198
|||||
Sbjct 2015 CTTGT 2011
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58835038740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5