BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488123
Length=833
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13070.1 | Symbols: | MSF1-like family protein | chr5:41476... 1243 0.0
> AT5G13070.1 | Symbols: | MSF1-like family protein | chr5:4147636-4149252
FORWARD LENGTH=878
Length=878
Score = 1243 bits (673), Expect = 0.0
Identities = 758/798 (95%), Gaps = 9/798 (1%)
Strand=Plus/Plus
Query 1 AACACCGCCATTGATTTGCTT-C-CTCTA--TTTACTCTCGTCACGTCCTCCATTTTTGG 56
|||||||||||||||| |||| | ||||| |||||||||||||||||||||| ||||||
Sbjct 16 AACACCGCCATTGATTAGCTTCCTCTCTATTTTTACTCTCGTCACGTCCTCCACTTTTGG 75
Query 57 G---GTATTACTTCTCCAAGCTCACCAAGATCTTGAATTTGCCGACCTCTCAAGATTCTT 113
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 GTCATTATTACTTCTCGAAGCTCACCAAGATCTTGAATTTGCCGACCTCTCAAGATTCTT 135
Query 114 GATGGTAAAAGCATACAGACAAGAGCATGTCTACAAGCATCCGTGGGAGCGGGTGAGTGC 173
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 136 GATGGTAAAAGCATACAGACAAGAGCATGTTTACAAGCATCCGTGGGAGCGGGTGAGTGC 195
Query 174 TGCCTCATGGAGGAAGTTTGCAGACCCTGAAAACAAACGCATCCTTTCGCATATCCTTGA 233
||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 196 TGCTTCATGGAGGAAGTTTGCAGACCCTGAAAACAAACGCATCCTTTCTCACATCCTTGA 255
Query 234 AGTCGATACCTTGAACCGTAAACTTGACACTGAGACCGGGAAACTCCACACCACACGTGC 293
|||||||||||||||| | ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 256 AGTCGATACCTTGAACAGGAAACTCGACACTGAGACCGGGAAACTCCACACCACGCGTGC 315
Query 294 TCTCACCATCCATGCTCCTGGTCCATGGTTTCTCCACAGGATCATTGGCCAGGACATTTG 353
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||
Sbjct 316 TCTCACCATCCATGCTCCTGGTCCATGGTTTCTCCATAGGATCATTGGTCAGGACATCTG 375
Query 354 TCACTGTGTTGAATCAACAGTTGTGGATGGCAAATCACGTTCTATGCAGCTAACAACAAA 413
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 376 TCACTGTGTTGAATCAACAGTTGTAGATGGCAAATCACGTTCTATGCAGCTAACAACAAA 435
Query 414 GAACATTAGTCTCAAAAAGTTCATTGAAGTGGAGGAGAGGATAAGATATGATCCGCATCC 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 GAACATTAGTCTCAAAAAGTTCATTGAAGTGGAGGAGAGGATAAGATATGATCCGCATCC 495
Query 474 AGAAAATCCGTCGGCCTGGACTGTTTGTAGCCAGGAGACAAGCATTCGGATCAAACCCTT 533
||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 AGATAATCCATCAGCCTGGACTGTTTGTAGCCAGGAGACAAGCATTCGGATCAAACCCTT 555
Query 534 GTCGGCTCTGGCCTCAATGGCTGAGAAAGTTGAACAAAAGTGCGCCGAGAAATTCATGCA 593
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 556 GTCGGCTCTGGCCTCAATGGCTGAGAAGGTTGAACAGAAGTGCGCAGAGAAATTCATGCA 615
Query 594 GAATAGCGTTAAAGGACGAGAGGTTATGGAGAGGATTTGTAAGTATATGGAAGCAGAATC 653
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GAATAGCGCTAAAGGAAGAGAGGTTATGGAGAGGATTTGTAAGTATATGGAAGCAGAATC 675
Query 654 CGCTCGGATCTAAAGATCCAAACTTCTTAGATTCCAATATCTTCTTGGTTTTTGATTCTT 713
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 676 CGCTCGGATCTAAAGATCAAAACTTCTTAGATTCCAGTATCTTCTTGGTTTGTGATTCTT 735
Query 714 GAATGTTTTGTAAGTCAAAA-AGGCTACGTTTTTGGAGCATGGTAATAATAAGTTTATGG 772
|||||||||||||||||| | || |||||||||||||||||||| ||||||||||||||
Sbjct 736 GAATGTTTTGTAAGTCAAGAGAG-CTACGTTTTTGGAGCATGGTTATAATAAGTTTATGA 794
Query 773 AACAGTTTAGATGAAATT 790
|||||||||||| |||||
Sbjct 795 AACAGTTTAGATCAAATT 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40589190776
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5