BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488124
Length=668
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13080.1 | Symbols: WRKY75, ATWRKY75 | WRKY DNA-binding prot... 1022 0.0
> AT5G13080.1 | Symbols: WRKY75, ATWRKY75 | WRKY DNA-binding protein
75 | chr5:4149740-4151150 REVERSE LENGTH=757
Length=757
Score = 1022 bits (553), Expect = 0.0
Identities = 638/677 (94%), Gaps = 14/677 (2%)
Strand=Plus/Plus
Query 1 ATATCTTAACAAAGTCCAATCAATTATCAAACAAAAAGAGAGGaaaaaaaaaCCTTCTTC 60
||||||||||||| ||||||||||||||||||||||||||||| || |||| |||||||
Sbjct 7 ATATCTTAACAAACTCCAATCAATTATCAAACAAAAAGAGAGG-AACAAAATTCTTCTTC 65
Query 61 TTTTGGAATTCAGGTGGATTGGTCTG--TC----TTACAA-CAAGATTCCACAAACAATT 113
||||||||||||||||||| |||||| || ||| || |||||||||||||| ||||
Sbjct 66 TTTTGGAATTCAGGTGGATCGGTCTGTCTCGTTGTTATAATCAAGATTCCACAAATAATT 125
Query 114 AGAAATATGGAGGGATATGATAATGGGTCGTTGTATGCTCCGTTTTTGTCGTTGAAATCT 173
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 126 AGGAATATGGAGGGATATGATAATGGGTCGTTGTATGCTCCTTTTTTGTCGTTGAAATCT 185
Query 174 CATTCAAAACCGGAGATGCATCAAGGCGAATTAGAAGAGGGCTCAAAGGTTAGATCAGAA 233
||||| ||||| ||| |||||||||||| | ||||||| ||||||||||||||||||||
Sbjct 186 CATTCGAAACCAGAGCTGCATCAAGGCG-A--AGAAGAGAGCTCAAAGGTTAGATCAGAA 242
Query 234 GGTTGTTCGAGAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTT 293
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GGTTGTTCGAAAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTT 302
Query 294 CAGACAAGGAGCCAAGTGGATATTCTTGATGATGGTTATCGATGGAGGAAATATGGCCAA 353
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CAAACAAGGAGCCAAGTGGATATTCTTGATGATGGTTATCGATGGAGGAAATATGGCCAA 362
Query 354 AAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGCACATATGGAGGATGC 413
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 363 AAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGTACATATGGAGGATGC 422
Query 414 AACGTGAAGAAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTAC 473
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AATGTGAAGAAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTAC 482
Query 474 GAAGGAGTGCATTCGCATCCCATTGAGAAATCCACCGAAAACTTCGAGCATATTCTCACT 533
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 483 GAAGGAGTGCATTCGCATCCCATCGAGAAATCCACCGAAAACTTCGAGCATATTCTCACT 542
Query 534 CAAATGCAAATCTACTCTTCTTTCTAATTG-TTCTCTCAAA-TCTTTTATACCTTAATTT 591
|||||||||||||||||||||||||| || |||||||||| |||||||||||||| |||
Sbjct 543 CAAATGCAAATCTACTCTTCTTTCTAGTTAATTCTCTCAAAATCTTTTATACCTTATTTT 602
Query 592 GGAGCCTATAATTCTTAGAGCTCATGTTGTAAATTATTTATACAAATTAGAGTGTATACA 651
||||||||||||||||||||||||||||||||||||||| | |||||||| ||| ||||
Sbjct 603 AGAGCCTATAATTCTTAGAGCTCATGTTGTAAATTATTTACAAAAATTAGAATGT-TACA 661
Query 652 TTTTACGTGTGTTGAAA 668
|||||||||||||||||
Sbjct 662 TTTTACGTGTGTTGAAA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32300556521
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5