BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488125
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13090.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1182 0.0
> AT5G13090.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G24270.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:4153585-4154672 REVERSE LENGTH=1088
Length=1088
Score = 1182 bits (640), Expect = 0.0
Identities = 842/930 (91%), Gaps = 51/930 (5%)
Strand=Plus/Plus
Query 1 CATGAAAATGAAGAAGAAAGGAAAAGTTTACCCATCTCCTCCT-CT--TCCT---TCTTC 54
|||||||||||||||||||||||||||||| |||||||||||| || |||| |||||
Sbjct 105 CATGAAAATGAAGAAGAAAGGAAAAGTTTATCCATCTCCTCCTCCTCCTCCTCAATCTTC 164
Query 55 ATCTTCCTCTTCTTCGGCTAACCATCTCAACGAAGATGATGATGATTCTCTCTCTGTGTT 114
||| || |||||||| | ||||||||||||||||| |||||||||||||||||||||||
Sbjct 165 ATCATCTTCTTCTTCTTCGAACCATCTCAACGAAGAAGATGATGATTCTCTCTCTGTGTT 224
Query 115 GAAGCTTCTTCCAGCAACGATTTTGGTTCTCGTTTCTGTTCTCTCAGCTGAAGAAAGAGA 174
||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||
Sbjct 225 GAAGCTTCTTCCAGCGACGATTTTGGTTCTTGTTTCTGTTCTCTCCTCTGAAGAAAGAGA 284
Query 175 AGTTCTTGCTTACTTAATCACAAGAGGAACCACCATTTCCGATAGAGGGAACTCTTCTTC 234
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 285 GGTTCTTGCTTACTTAATCACAAGAGGAACCACCATTTCCGATAGAGGAAACTCTTCTTC 344
Query 235 GAAGAATAACAAGACGAAGAAGAAGAGCAACAACAAATCT-GCCAAAAATCACAAGCCAC 293
|||||| ||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 345 AAAGAAT---AAGACGAAGAAGAAGAG---CAACAAATCTAG-CAAAAATCACAAGCCAC 397
Query 294 CAGTTTTCGATTGTGAGTGTTTCGATTGTTACACTAACTACTGGTTTCGTTGGGATTCAT 353
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 398 CAGTTTTCGATTGTGAGTGTTTCGATTGTTACACTAACTACTGGTTTCGTTGGGATTCTT 457
Query 354 CGCCGAATCGCGAGCTTATCCATGAAATCATCGAAGCTTTCGAGAATCATCATCTCACTA 413
|||||||||| ||||||||||||||||||||||||||||||||| | |||| ||||
Sbjct 458 CGCCGAATCGTGAGCTTATCCATGAAATCATCGAAGCTTTCGAG-A--ATCA--TCAC-- 510
Query 414 GTGGTGAACAAAACTCCGCTTCTCGCAACAAATCTAAGAGAGGTAAGAAGAAAGAGAAAC 473
|||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||
Sbjct 511 --GGTGAAGAAAACTCTGCTTCTCGGAGCAAATCTAAGAGAGGTAAGAAGAAAGAGAAAC 568
Query 474 CGGGTCGTCGGGTCACTGATTCGGATAGTAATAATAAACCGGGTCTTCGGGTTA-GTGAT 532
||||||||||||||||||||||||||||||| | |||| ||||||||| | | |||
Sbjct 569 CGGGTCGTCGGGTCACTGATTCGGATAGTAA-A-----CCGGCTCTTCGGGTCACG-GAT 621
Query 533 GATGATGATAAGGTTTCTAAACCCGTCGTCGAGCCAATGA-CTGAGACCACTGTTTCCGA 591
||| |||||||| ||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct 622 AATGGTGATAAGGATTCTAAACCCGTCGTGGAGCCAATGAAC-GAGACCACTGTTTCCGA 680
Query 592 GAGTAGCCACGTGTCGTCACCAGATAGATTGAGTGAAGCTGAGGTGGCGGAAGGAGAGCC 651
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 681 GAGTAGCCACGTGTCGTCACCAGTTAGATTGAGTGAAGCTGAGGTGGCAGAAGGAGAACC 740
Query 652 GGAGGATGAGATTGTTGTTGAAGAAGACGAGGA-AGAGGAAGAAGAATCGACGGTGGTTG 710
||||||||||||||||||||||||||| | | | | || ||||||||||||||||||| |
Sbjct 741 GGAGGATGAGATTGTTGTTGAAGAAGATG-G-ACA-AG-AAGAAGAATCGACGGTGGTGG 796
Query 711 TTTTTGCGGCGGCGGCGAGTACTGTGACGGGACACAA-GGGATTGGCGAGGAAGGTATTG 769
||||| ||||||||||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 797 TTTTTCCGGCGGCGGCGAGTAATGTGACGGGACACAAAGGG-TTGGCGAGGAAGGTATTA 855
Query 770 CCGGACGTGTTGGGTTTGTTCAATTCCAATTTTTGGAGGCTTTGGAATCCGAACGCATAA 829
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 856 CCGGACGTGTTGGGTTTGTTCCATTCCAATTTTTGGAGGCTTTGGAATCCGAACGCGTAA 915
Query 830 AAGCATCGACCGGAAAAA-GTTATGCttttttt--ttttt--GTTGTTACTGTTTTCTCA 884
|||||||||||||||||| |||||||||||||| ||||| |||||| |||||||| |
Sbjct 916 AAGCATCGACCGGAAAAAAGTTATGCTTTTTTTAATTTTTTTGTTGTTGCTGTTTTC--A 973
Query 885 GGaaaaaaaTATAATCTCATCTTTTGCTTT 914
||||||| || | ||||||||||||||||
Sbjct 974 GGAAAAA--TA-A-TCTCATCTTTTGCTTT 999
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5