BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488128
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13120.1 | Symbols: ATCYP20-2, CYP20-2 | cyclophilin 20-2 | ... 1064 0.0
> AT5G13120.1 | Symbols: ATCYP20-2, CYP20-2 | cyclophilin 20-2
| chr5:4162503-4164784 REVERSE LENGTH=1055
Length=1055
Score = 1064 bits (576), Expect = 0.0
Identities = 616/635 (97%), Gaps = 4/635 (1%)
Strand=Plus/Plus
Query 1 TTTTGAGCTCCAATGGCGGCCTTATCGATGACTCTGTCAAATCCGAAGTCGCTGTCAGCT 60
|||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 53 TTTTGAGCTCCAATGGCGACCTTGTCGATGACTCTGTCAAATCCGAAGTCGCTCTCAGCT 112
Query 61 GCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTCTCACATCTACCTCTTTCCGATTG 120
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 113 CCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTG 172
Query 121 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCGTCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 173 CGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCA 232
Query 181 TCGCTCCTCCTTCACACGTCTTCTACCAAAAGAAACCACCGCTGCTTCTC-GATTCAATC 239
|||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||
Sbjct 233 TCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTG-TTCAATC 291
Query 240 CAATTCTGAGATTGTTAGC-GAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 298
|||| ||||| | |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CAATGCTGAGGTGGTTA-CTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATA 350
Query 299 TAAGTGTTGGAAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 358
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTG 410
Query 359 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTG 470
Query 419 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 471 GCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACT 530
Query 479 TTGAAAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGA 590
Query 539 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTGAGTATGGCAAATGCTGGCCCTAATA 598
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 591 ATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATA 650
Query 599 CAAATGGAAGTCAGTTCTTTATCTGCACTGTTAAG 633
||||||||||||||||||||||||||||| |||||
Sbjct 651 CAAATGGAAGTCAGTTCTTTATCTGCACTATTAAG 685
Score = 425 bits (230), Expect = 3e-118
Identities = 334/377 (89%), Gaps = 35/377 (9%)
Strand=Plus/Plus
Query 701 ACGTCATGGTTGGACGGAAGGCATGT-G-G-T-------GTAATAGAAGGAATGGAAGTG 750
|||||||||||||||||||| ||||| | | | |||||||||||||||||||||
Sbjct 686 ACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTG 745
Query 751 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 810
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 746 GTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTG 805
Query 811 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGCAAGATCATT-AACCAAA 869
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 806 ATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAAAAGTAAGATCATTTAACCAAA 865
Query 870 ACCTTGTAGACATGAGATGGAGCCTGTGTTTGCACTTTACAACCCTTTCTTTTGTGTAAT 929
| ||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||
Sbjct 866 ATCTTGTAGACATGAGATGGAGCTTGTTTTTGCATTTTACAACCCTTTCTTTTGTGTAAT 925
Query 930 GGATTTGTATCCCCTTCTTCCTGACCTCCCAAAAATTTAAGAAAGAAATAGT-TT----T 984
||||||||||||||||||||| | |||| ||||||||||||||||| || |
Sbjct 926 GGATTTGTATCCCCTTCTTCC--A------AAAA-TTTAAGAAAGAAATAGTATTCCGCT 976
Query 985 G----------AACTCAGATTTCATTTCATTGGTTTGTTTCGAAATTAACCAATGTGTTA 1034
| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 977 GCCGGGTGTTGAACTCATATTTCATTTCATTGGTTTGTTTCGAAATTAACCATTGTGTTA 1036
Query 1035 TAGCGGTTCAGTTGCAT 1051
|||||||||||||||||
Sbjct 1037 TAGCGGTTCAGTTGCAT 1053
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51540234822
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5