BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488129
Length=2439
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13130.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and... 3446 0.0
> AT5G13130.1 | Symbols: | Histidine kinase-, DNA gyrase B-, and
HSP90-like ATPase family protein | chr5:4166622-4170517 FORWARD
LENGTH=2453
Length=2453
Score = 3446 bits (1866), Expect = 0.0
Identities = 2279/2470 (92%), Gaps = 62/2470 (3%)
Strand=Plus/Plus
Query 1 CGTGTCTCACGtctctctctctctctctctcCAACTTCAAGCTGCTTCAAAACCCTAGAA 60
||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||
Sbjct 11 CGTGTCTCACGTCTCTCTCTC-CTCTCTC-CC-ACTTCAAGCTGCTTCAAAACCCTAGAA 67
Query 61 GCTTCTACTGCAGCCAGGGCATTCTTCTCAAATCAAGCT-CAACAAACCGCTGCTA-TTA 118
|||||||||||| ||| || ||||||||||||||||| | ||| ||||| ||| || | |
Sbjct 68 GCTTCTACTGCAACCACGG-ATTCTTCTCAAATCAAG-TCCAATAAACCACTGTTAGTGA 125
Query 119 GTCGGAGGCATGGCCGAATCTGGCAGTACTAACCCTAAATCCCAATCCGTGGTTCCCGAT 178
|||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 126 -TCGGAGACATGGCCGAATCTGGCAGTACTAACCCTAAATCCCCATCCGTTGTTCCCGAT 184
Query 179 TCGGCTCTCGGTGGACTCAAGAGAGATTTAAGAAACTATGAGGACGGTGATGATACTAAT 238
||| ||||||||||||| ||||||||||||||||||||| | |||||||||||| |||||
Sbjct 185 TCGACTCTCGGTGGACTGAAGAGAGATTTAAGAAACTATCACGACGGTGATGATTCTAAT 244
Query 239 AACTTTTCTATCAAGAAATCGAGGACTAC-AACGATAGAGAATACCTCTCAGGGTTGTaa 297
||||| |||||||||||||||| ||| || || ||| ||||||| || || |
Sbjct 245 AACTTGTCTATCAAGAAATCGAAGACCACGAA-GATGGAGAATA--ACT----GTCG--- 294
Query 298 aaaaaTCGTGCCTTTGGATGTGAA-ACCATTGGCGATTGTGGAACCGGAAACTCCAAAGC 356
| ||||||| ||||||||||| || ||||||| |||| ||| |||||| ||||||||||
Sbjct 295 AGAAATCGTTCCTTTGGATGT-AACACCATTGTCGATCGTGCCACCGGACACTCCAAAGC 353
Query 357 TCTCTAGACAGTTTTGGAAAGCTGGTGACGACGATGAAGCTGCGCCTGTACCTCTTTATT 416
||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 354 TCTCTAGACAGTTTTGGAAAGCTGGCGATGATGATGAAGCTGCGCCTGTACCTCTTTATT 413
Query 417 GTAGCAATGATGCGGCGGTTAGGGTTCATCCTCAATTTCTTCATGCAAACGCCAAAAGCC 476
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 414 GTAGCAATGATGCGGCGGTTAGGGTTCATCCTCAATTTCTTCATGCAAACGCCACAAGCC 473
Query 477 ACAAATGGGCTCTTGGAGCTTTGGCTGAACTTCTAGACAATTCTCTTGACGAGGTAAGTA 536
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 474 ACAAATGGGCTCTTGGAGCTTTAGCTGAACTTCTAGACAATTCTCTTGACGAGGTAAGTA 533
Query 537 ATGGGGCTACATATGTTCATGTTGATTCGACAACCAATAAAAGAGACGGGAAAAGCAGCA 596
||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 534 ATGGGGCTACATATGTTCATGTTGATTCGACAATAAATAAAAGAGACGGAAAAAGCAGCA 593
Query 597 TTCTTATAGTTGAAGACAATGGAGGTGGGATGAATCCGAGTACGTTTAGAGAGTTCCTTT 656
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 594 TTCTTATAGTTGAAGACAATGGAGGTGGGATGAATCCGAGTACGTTTAGAGAGTGCCTTT 653
Query 657 CTTTGGGGTATTCAAGGAAACGCAATCTGGTTAATAGAGTTGGTCAATATGGGAATGGAT 716
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 654 CTTTGGGGTATTCAAGGAAACGCAATATGGCTAATAGAGTTGGTCAATATGGGAATGGAT 713
Query 717 TCAAAACTAGTACAATGAGGCTTGGTGCTGATGCAATTGTCTTCTCACGTTGTCGAGGAA 776
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 714 TCAAAACTAGTACAATGAGGCTTGGTGCTGATGCAATTGTCTTCTCACGTTCTCGAGGAA 773
Query 777 TCAATGGAAACAATCCGACACAGAGCATTGGTATGCTATCATATACGTTTCTTTACGAGA 836
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TCAATGGAAATAATCCGACACAGAGCATTGGTATGCTATCATATACGTTTCTTTACGAGA 833
Query 837 CAAGAAAATGTGAAGCAATTGTCCCCACGGTACAAATTGATTTTGAGTTGGTAGATAACA 896
|||||||||||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 834 CAAGAAAATGTGAAGCAATTGTCCCCACGG------TTGATTATGAGTTGGTAGATAACA 887
Query 897 AATGGAAGGAGATAGTTTATAACTCCACAGAGGAGTGGGTTGATAATTTAGAGACTATAG 956
||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct 888 AATGGAAGGAGATAGTTTATAACTCCACAAATGAGTGGCTTGATAATTTAGAGACTATAT 947
Query 957 TGAGGTGGTCGCCGTATCTATCCCAACAAGATTTATTGGACCAGTTTAATCACCTAGAAG 1016
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 948 TGAGGTGGTCGCCTTATCTATCCCAACAAGATTTATTGGACCAGTTTAATCACCTAGAAG 1007
Query 1017 AACAAGGTACTCGGATCGTGATTTATAATTTATGGGAGGATGATGAAGGGAAGCTGGAAC 1076
| |||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||
Sbjct 1008 AGCAAGGTACTCGGATCGTGATTTATAACTTATGGGAAGATGATGAAGGGAAGATGGAAC 1067
Query 1077 TTGATTTTGATACAGATCCTCATGATATTCAACTCAGAGGTGTAAACAGAGATGAAAAGA 1136
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1068 TTGATTTTGATACAGATCCTCATGATATTCAACTCAGAGGTGTGAACAGAGATGAGAAGA 1127
Query 1137 ACATCGAAATGGCGAAAACTTATCCTAACTCGAGGCATTTCCTGACTTATCGACACTCAC 1196
||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1128 ACATCGATATGGCTAAAACTTATCCTAACTCAAGGCATTTCCTGACTTATCGACACTCGC 1187
Query 1197 TACGTAGTTATGCATCGATTCTGTATCTCAAACATCCGGATAATTTCAGAATCATTCTTC 1256
|||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1188 TACGTAGTTATGCATCAATTCTGTACCTCAAACGTCCGGATAATTTCAGAATCATTCTTC 1247
Query 1257 GTGGCAAAGATGTCGAATATCACAGCATCTTAGACGACATGATGATGACCGATGAGAAAA 1316
||||| ||||||||||| |||||||| |||||||||||||||||| || || |||||||
Sbjct 1248 GTGGCGAAGATGTCGAACATCACAGCGTCTTAGACGACATGATGAAGATTGAAGAGAAAA 1307
Query 1317 CATACAAACCTACGCGTTCTCCAGAATGGCCAGATCAAGACGAGATGGTTGCTTCTCTAA 1376
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1308 CATACAAACCTATGCGTTCTCCAGAATGGCCAGATCAAGAAGAGATGGTTGCTTCTCTAA 1367
Query 1377 AGCTTGGCTTTGTGAAAGATGCTCATCATCACATCGACATACAAGGGTTCAATGTTTACC 1436
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1368 AGCTTGGCTTTGTGAAAGATGCTCATCATCACATCGACATACAAGGTTTCAATGTTTACC 1427
Query 1437 ATAAGAACCGGCTTATCAAGCCATTTTGGAGGGTTTGGAATGCTGCTGGAAGTGATGGAC 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 ATAAGAACCGGCTTATCAAGCCATTTTGGAGGGTTTGGAATGCTGCTGGAAGTGATGGAC 1487
Query 1497 GTGGCGTTATTGGAATTTTGGAAGCTAATTTCATACAACCAGCTCATAATAAGCAAGGTT 1556
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1488 GTGGCGTTATTGGAATATTGGAAGCTAATTTCATACAACCAGCTCATAATAAGCAAGGAT 1547
Query 1557 TTGAGCGAACCGTCGTTCTTTCTAAACTCGAAAACCGATTGATC-CAACACCAAAAGAAC 1615
|||||||||||||||||||| |||||||||||| ||||||| || || ||||||||||||
Sbjct 1548 TTGAGCGAACCGTCGTTCTTGCTAAACTCGAAAGCCGATTGGTCACA-CACCAAAAGAAC 1606
Query 1616 TATTGGTCTTCAAGGTGTCACGAGATTGGTTATGCTCCAAGAAGGAAACAAAAGAATTAT 1675
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1607 TATTGGTCTTCAAGGTGTCACGAAATTGGTTATGCTCCAAGAAGGAAACAAAAGAATTAT 1666
Query 1676 GAAAGTAGCGTTACAGAAACCACTCGACCTTTCAATAACATAAACGTTGTTAAGGCATCT 1735
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||
Sbjct 1667 GAAAGTAGCGTTACAGAAACCCCTCGACCTTTCAACAACATAAACGTTGTTAAGGGATCT 1726
Query 1736 TCTTCTA---CTCCAGCACCGGCTCCA-T-T-CAGGACATATGTTGAACCATCTGGAAGA 1789
||||||| |||||| ||| | || | | | |||| || ||||||||||||||||||||
Sbjct 1727 TCTTCTAGTACTCCAGTACCAGTTCGAGTATTCAGGCCAAATGTTGAACCATCTGGAAGA 1786
Query 1790 AACCAAAGCCCTCAGGTTGAAACACGAGAAAGAAGTTATGATATAAAACCTCAAATCGGG 1849
||||||| |||||||||||||||||||||||| |||| ||| || || ||| | ||||||
Sbjct 1787 AACCAAATCCCTCAGGTTGAAACACGAGAAAGGAGTTTTGACATCAATCCTGAGATCGGG 1846
Query 1850 TCTAC-AATCGGAAACCAT---GGGCTTGGGACAAGTAGTTTCAAAGAAACAGGCTCAGT 1905
||| || | ||| | || |||||||||| |||||||||||||||||||||||||||
Sbjct 1847 GCTAAGAA-CAGAAGCTATTATGGGCTTGGGATAAGTAGTTTCAAAGAAACAGGCTCAGT 1905
Query 1906 TAATCTAGAAGCAGAGTTGCAGAGGGTGAAACAGGAATCAGCAAAACTGGTCTCTGAGTT 1965
||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||| |
Sbjct 1906 TAATCTAGAAGCAGAGTTGCAGAAGGTGAAACAGGAATCAGCCAAACTAGTCTCTGAGCT 1965
Query 1966 AAAGAGAGAAAAAGCA-CTACTTGAGTTGCAACTCGAGGAGTCGAAAGCTAAGATT-AGA 2023
||||| ||||| || || ||||||||||||||| ||||||| ||||||||||| | |
Sbjct 1966 GCAGAGACAAAAA-CAACTGCTTGAGTTGCAACTCCAGGAGTCAAAAGCTAAGATCCA-A 2023
Query 2024 AACTTGGAAAAGGCGCAGAGGGAGAAAGAACTGCTTGAGTTGCAACTTAAGGAGTCAAAG 2083
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2024 AACTTGGAAAAGGCGCAGAGGGAGAAAGAAGTGCTTGAGTTGCAACTTAAGGAGTCAAAA 2083
Query 2084 GCTAGGATCCAAAACTTGGAAAATCGGCAGGAGGGAGTGAGTACAATTTTTCAACAAGAA 2143
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 2084 GCTAGGATCCAAAACTTGGAAAATCGGCAGGAGGGAGTAAGTACTATCTTTCAACAAGAA 2143
Query 2144 AGAGCCCGCAGAGATGTGACTGAGGATGGCTTAAGGAGGAAACTACGGGATGCTTCTGAT 2203
||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||
Sbjct 2144 AGAGCCCGCAGAGATGTAACTGAGGATGGCTTAAGGAAAAAACTACGGGAAGCTTCTGAT 2203
Query 2204 GTCATCGATGGGCTAAGGAAGCAAGTGGAGACCTTCAAAGGAAAACGCATGTTGTAA--- 2260
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 2204 GTCATCGATGGGCTAAGGAAGCAAGTGGATACCTTCAAAGGAAAACGCATTTTGTAAACA 2263
Query 2261 --G---CA----C-GTACTCTTTTCTAGTTTGtttttttttttGGTTTAAGTTTTAAGGG 2310
| || | ||||||||||||||||||||||||| || || ||||||||||||
Sbjct 2264 CAGTTTCAAGATCAGTACTCTTTTCTAGTTTGTTTTTTTGGTT--TT-AAGTTTTAAGGG 2320
Query 2311 TT-GTACATAAACTTCTAGCAATAGGCAGAATGTAATGTATATTTTAGTAGACTTAGGGA 2369
|| |||||||||||||| | || ||||||||||||||||||| | |||||||||||||
Sbjct 2321 TTTGTACATAAACTTCTCTCCTTAAGCAGAATGTAATGTATATTAT-GTAGACTTAGGGA 2379
Query 2370 CTTTTGTGAAAGACCCCAACTCAAAATGTAAGCATGCAGTGGTTTTTTGCTAATCAAGGT 2429
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2380 CTTTTGTGAAAGACCCCAACTCAAAATGTAAGCAGGCAGTGGTTTTTTGCTAATCAAGGT 2439
Query 2430 CAAGCATGCA 2439
||||||||||
Sbjct 2440 CAAGCATGCA 2449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121133915085
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5