BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488130
Length=858
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13140.1 | Symbols: | Pollen Ole e 1 allergen and extensin ... 1334 0.0
> AT5G13140.1 | Symbols: | Pollen Ole e 1 allergen and extensin
family protein | chr5:4170560-4171794 REVERSE LENGTH=982
Length=982
Score = 1334 bits (722), Expect = 0.0
Identities = 813/857 (95%), Gaps = 5/857 (1%)
Strand=Plus/Plus
Query 1 ACATTATCATCAAAAAGAACAATAGAGAGAGCGAGTGA-GATTAGCCACAATGTATTTTC 59
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1 ACATTATCATCAAAAAGAACAATAGAGAGAGCGAGTGAGGATTAGCCACAATGTATCTTC 60
Query 60 CTCTCCTCTATCTTCTGCTTCTGTCTTCTTGCTTGACACATCAAGCTTTAGGCCGTGGGC 119
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
Sbjct 61 CTCTCCTCTATCTTCTGTTTCTGGCTTCTTGCTTGACACATCAAGCTTTAGGCCGTGGTC 120
Query 120 GTGGCCGGTCACCACCGGAAGGAAGCTTGGACCCTTCTTCTCGCATCACTGTCGTCGGAG 179
|||||||| || ||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 121 GTGGCCGGCCATCACCGGAAGGAAGCTTGGATCCTTCTTCTCGCATCACCGTAGTCGGAG 180
Query 180 TTGTCTACTGTGACACGTGTTCTATCAACACTTTCTCAAGACAGAGCTATTTCTTAGAAG 239
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 181 TTGTCTACTGTGACACGTGTTCTATCAACACTTTCTCAAGACAAAGCTATTTCTTACAAG 240
Query 240 GTGTGGAAGTTCATGTGACCTGTAGATTCAAAGCAAGTTCACCAAAAACAGCAGAGGAAG 299
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTGTGGAAGTTCATGTGACATGTAGATTCAAAGCAAGTTCACCAAAAACAGCAGAGGAAG 300
Query 300 TGAACATATCAGTAAACAGAACAACAAACAGAAGCGGCATGTACAAGCTCGAGATCCCTC 359
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 301 TGAACATATCAGTAAACAGAACAACAAACAGAAGTGGCGTGTACAAGCTCGAGATCCCTC 360
Query 360 ACGTGGATGGCATCGATTGCGTCGACGGAATCGCTATAGCATCACAATGCAGCGCCAAGC 419
|||| |||||||||||||| |||||||||||||||||| ||||||||||||| ||||||
Sbjct 361 ACGTAGATGGCATCGATTGTGTCGACGGAATCGCTATATCATCACAATGCAGTGCCAAGA 420
Query 420 TACTCAAAACCTCCTCCGACGACAATGGAGGCTGCAGCATCCCCGTTTTCCAAACTGCAA 479
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 421 TACTCAAAACCTCCTCTGACGACAACGGAGGCTGCAGCATCCCTGTTTTCCAAACTGCAA 480
Query 480 CCAACGAAGTATCCATCAAATCAAAGCAAGATCGTGTCTGTATCTACAGCTTAAGCGCAC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCAACGAAGTATCCATCAAATCAAAGCAAGATCGTGTCTGTATCTACAGCTTAAGCGCAC 540
Query 540 TCAGCTACAAACCTTCC-CACAAAAACACATCATTATGTGGAAACGGCGGGAAGAAAAAT 598
| ||||| ||||| ||| ||||||||||||||||| ||||||||||| ||||||||| ||
Sbjct 541 TAAGCTATAAACC-TCCTCACAAAAACACATCATTGTGTGGAAACGGAGGGAAGAAACAT 599
Query 599 CACCGAAAGGAGGAGAAGGCGGAGAAGAAATTTAGAGATTCGAAATTCTTCTGGCCTTAT 658
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 600 CACCGAAAGGACGAGAAGGTGGAGAAGAAGTTTAGAGATTCGAAATTCTTCTGGCCTTAT 659
Query 659 TTGGCACCGTATTGGTTCTCTTGGCCGTATCCGGATTTACCTCCATTGCCGACTCTACAG 718
|||||||||||||||||| ||||||| ||||||||| ||||||||||||| ||||||| |
Sbjct 660 TTGGCACCGTATTGGTTCCCTTGGCCATATCCGGATCTACCTCCATTGCCAACTCTACCG 719
Query 719 CCGCTTCCGTCTTCCCCTTTCCCTT-TTCTACCTTTCGGAAACCCGAATCCGGCATTGCC 777
|| ||||||||| ||||||||||| || ||||||||||||||||||||| |||||||||
Sbjct 720 CCTTTTCCGTCTTTCCCTTTCCCTTCTT-TACCTTTCGGAAACCCGAATCTGGCATTGCC 778
Query 778 GGCTTTCGATTGGAAAAATCCGGTCACTTGGATACCTTATCTTCCACGTTTTCCTCCAGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGCTTTCGATTGGAAAAATCCGGTCACTTGGATACCTTATCTTCCACGTTTTCCTCCAGG 838
Query 838 AGATCATAATCCTTAGG 854
|||||||||||||||||
Sbjct 839 AGATCATAATCCTTAGG 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41845044451
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5