BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488133
Length=1235
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13170.1 | Symbols: SAG29, SWEET15, AtSWEET15 | senescence-a... 1803 0.0
> AT5G13170.1 | Symbols: SAG29, SWEET15, AtSWEET15 | senescence-associated
gene 29 | chr5:4181042-4183306 REVERSE LENGTH=1303
Length=1303
Score = 1803 bits (976), Expect = 0.0
Identities = 1142/1216 (94%), Gaps = 35/1216 (3%)
Strand=Plus/Plus
Query 28 GAGAG-AAGCTTTAGGGTTaaaaaaaaaaaaaaaaaCTGAGACCCTATAGAAATC-CCCA 85
||||| ||||||||||||| ||||||||||||||| |||||||| |||||||| || |
Sbjct 48 GAGAGAAAGCTTTAGGGTTTCAAAAAAAAAAAAAAA--GAGACCCTTTAGAAATCTCCTA 105
Query 86 AGCGAGAAAAG-CTTCTCAATCGCTAGAGAAAATGGGAGTCATGATCAATCACCATTTGC 144
| | || |||| |||||||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 106 A-C-AGGAAAGTTTTCTCAATTGCTATAGAAAATGGGAGTCATGATCAATCACCATTTCC 163
Query 145 TCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAG 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 TCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAG 223
Query 205 TGCCAACTTTTTATAGAATATACAAGAAAAAATCGACGGAAAGTTTCCAGTCGCTACCGT 264
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 224 TGCCAACTTTTTATAGAATATACAAGAGAAAATCGACGGAAAGTTTCCAGTCGCTACCGT 283
Query 265 ACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 ACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACG 343
Query 325 CTTTTCTCCTAATTACCATAAACTCCTTCGGCTGCGTCGTGGAGACTCTCTACATCGCCA 384
||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||
Sbjct 344 CTTTTCTCCTAATTACCATCAACTCCTTTGGCTGCGTCGTGGAGACTCTCTACATAGCCA 403
Query 385 TGTTCTTCGCTTACGCCACCAAGGACAAAAGGATATCGGCTATGAAGTTGTTCATAGCGA 444
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
Sbjct 404 TGTTCTTCGCTTACGCCACCAGGGAGAAAAGGATATCGGCTATGAAGTTGTTCATAGCAA 463
Query 445 TGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTTACACATTTCGTGGTTGAAACTCC-C 503
|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 464 TGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTAACACATTTCGTGGTTAAAACTCCTC 523
Query 504 ACCCTCCAAGTCTCTGTCCTCGGCTGGATTTGCGTTGCCATTTCTGTTTCTGTTTTCGCT 563
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 524 -CCCTCCAAGTCTCTGTACTCGGCTGGATTTGTGTTGCCATTTCTGTTTCTGTTTTCGCT 582
Query 564 GCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTTCATGCCCTTC 623
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 583 GCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTACATGCCCTTC 642
Query 624 ACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTC 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTC 702
Query 684 AACGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATG 743
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 AATGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATG 762
Query 744 GTTTTATACG-GAGTTTATAGGAACTCAAATGAGAAACCAGAGATGGAAAAGAAGATTAA 802
||||| ||| | ||||| ||||||||||||||||||||||||| | || ||||
Sbjct 763 GTTTTGTACTTG-GTTTACAGGAACTCAAATGAGAAACCAGAGA---A---GA---TTAA 812
Query 803 TTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGT 862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 TTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGT 872
Query 863 GCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGACGCCGTTCATCATGAGGATCT 922
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 873 GCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGAAGCCGTTCATCATGAGGATCT 932
Query 923 GTCCAAAGCTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAATGCCACGTGGAGAC 982
|||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| |
Sbjct 933 GTCCAAAGTTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAGTGCTACGTGGAGGC 992
Query 983 TACTCGTTCTGAAACTGTTTGAAGTGTCAATCTACGTGAAGCA-AAATATAtttctctct 1041
||||||| ||||||| ||||||||||||||| | ||||||| ||| ||||| ||||||
Sbjct 993 TACTCGTCCTGAAACCGTTTGAAGTGTCAATAT--GTGAAGCTCAAA-ATATTGCTCTCT 1049
Query 1042 ctcttt-tgctcttttgctctctttctctcGGCTCGTC-GGGCCGGCCAAAGGAAGAAAT 1099
|||| | | |||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1050 CTCTCTCT-CTCTTTCACTCTCTTTCTCTCGGCTCGTCAGGGCCGGCCAAAGGAAGAAAT 1108
Query 1100 TAAATTGTATTATCGGCGGGGTGGTTTGTTAAATTTCCATTTTTGTTTCGTATCTTATTG 1159
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1109 T-----GTATTATCGGCGGGGTGGTTTGTTAAATTTCCATTTTTGTTTCGTATCTTATTG 1163
Query 1160 ATGATGTACTACTACTTGCATAAAGTTTTGTGTTTATTTGAATATATTATCTTTGTGTAA 1219
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 ATGATGTACTACT--T-GCATAAAGTTTTGTGTTTATTTGAATATATTATCTTTGTGTAA 1220
Query 1220 GTTGTAACTGGTGCTC 1235
||||||||| ||||||
Sbjct 1221 GTTGTAACTAGTGCTC 1236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60692458905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5