BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg488134

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G13190.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: LPS-induc...   989    0.0  


> AT5G13190.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: LPS-induced 
tumor necrosis factor alpha factor (InterPro:IPR006629); 
Has 30201 Blast hits to 17322 proteins in 780 species: Archae 
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants 
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI 
BLink). | chr5:4204817-4206405 REVERSE LENGTH=775
Length=775

 Score =  989 bits (535),  Expect = 0.0
 Identities = 570/587 (97%), Gaps = 2/587 (0%)
 Strand=Plus/Plus

Query  115  AAATAAAGGAGATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCGTATTACGCGGGGC  174
            ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct  190  AAACAAAGGAGATGGCGAAAGAGGGAACAACGGTGATCGGAGTTCCATATTACGCGGGGC  249

Query  175  AGAATCCGTATCAGGCCGGAATCGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTG  234
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  250  AGAATCCGTATCAGGCCGGAATTGTGCCGCCGAATGCTATCTATGGTGATCCGTTGGGTG  309

Query  235  CTCCGATTCAGCAAACGATTTATCGAGACACACCTGCTCCTTTCAATTGCCTTTATTGTG  294
            ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  310  CTCCGATTCAGCAAACGATTTATCGAGACACTCCTGCTCCTTTCAATTGCCTTTATTGCG  369

Query  295  GCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCA  354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  GCAACACTGGTCTCACCAATCTCAGATCGAAACCTGGTGTAGCTGCTGTTGTTGCTTGCA  429

Query  355  TGATGCCGTTTATGCTTGGATTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACA  414
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  430  TGATGCCGTTTATGCTTGGTTTCTGCTTTCTCTGCCCTTCAATGGATTGCCTCTGGAACA  489

Query  415  AACAGCACCATTGTCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCT  474
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  490  AACAGCACCATTGCCCTCAGTGTGGGAACAAGGTTGCTGACTTTGAGAAATCAGATCCCT  549

Query  475  GCCTGGTGATGGATCCGCCACAGTGGGAGCAACCTAGTTTCGCACTCCCAGCATGATACG  534
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct  550  GCCTGGTGATGGATCCGCCACAGTGGAAGCAACCTAGTTTCGCACTCCCAGCATGATAAG  609

Query  535  ATGTC-TTCTTTTTTCTTGTGATTAATATTGCTTGTGAAGTTGAGTCGTTCTGTTGCATG  593
            ||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  610  ATG-CATTCTTTTCTCTTGTGATTAATATTGCTTGTGAAGTTGAGTCGTTCTGTTGCATG  668

Query  594  TACTGGAAACAATCTAAGATCCAGAATAACCCTATAGAATGTGTGAGAAATGGAATATAT  653
            ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct  669  TACTGGAAAAAAACTAAGATCCAGAATAACCCTATAGAATGTGTGAGAAATGAAATATTT  728

Query  654  ATTCTTCTGTATCGTTTCACTGATTCATGAATGAACCCTCTATTGTC  700
            ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  729  ATTCTTCTGTATCGTTTCACTGATTCATGAATGAACCGTCTATTGTC  775



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33908049225


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5