BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488138
Length=862
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13220.1 | Symbols: JAZ10, TIFY9, JAS1 | jasmonate-zim-domai... 1061 0.0
> AT5G13220.1 | Symbols: JAZ10, TIFY9, JAS1 | jasmonate-zim-domain
protein 10 | chr5:4218888-4220814 FORWARD LENGTH=1019
Length=1019
Score = 1061 bits (574), Expect = 0.0
Identities = 790/889 (89%), Gaps = 35/889 (4%)
Strand=Plus/Plus
Query 1 AAGATGTCGAAAGCTACCGTAGAACTCGATTTCCTTGGCCTCGAGAAGAAGCAAACCAAT 60
|||||||||||||||||| |||||||||||||||| || || |||||||| ||||||||
Sbjct 111 AAGATGTCGAAAGCTACCATAGAACTCGATTTCCTCGGACTTGAGAAGAAACAAACCAAC 170
Query 61 AACGCTCCTAAGCCTAAGTTCCAGAAATTTCTCGATCGCCGTCGTAGTTTCCGAGAAATT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 171 AACGCTCCTAAGCCTAAGTTCCAGAAATTTCTCGATCGCCGTCGTAGTTTCCGAGATATT 230
Query 121 CAAGGTGCGATTTCGAAAATCGATCCGGAGATTATCAAATCACTGTTAGCTTCCGGTGCT 180
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 231 CAAGGTGCGATTTCGAAAATCGATCCGGAGATTATCAAATCGCTGTTAGCTTCCACTGGA 290
Query 181 AACCATTCCGATTCGTCAGCCAAAACTCGTTCGGTTCCGTCTACACCAAGAGAAGATCAG 240
||| |||||||||| || || ||| ||||||||||||||||||| || || |||||||||
Sbjct 291 AACAATTCCGATTCATCGGCTAAATCTCGTTCGGTTCCGTCTACTCCGAGGGAAGATCAG 350
Query 241 CCTCAGATCCCGATTTCTCCGCTCCACGCGCCTCTCGCCAGGTCCAGTACGGAAGTCGTT 300
||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||| |||||
Sbjct 351 CCTCAGATCCCGATTTCTCCGGTCCACGCGTCTCTCGCCAGGTCTAGTACCGAACTCGTT 410
Query 301 TCGGGAACTGTTCCAATGACGATCTTT-TACAATGGAACCGTCTCCGTTTTCCAAGTGTC 359
|||||||||||||| |||||||| ||| |||||||||| || || ||||||||||||||
Sbjct 411 TCGGGAACTGTTCCTATGACGAT-TTTCTACAATGGAAGTGTTTCAGTTTTCCAAGTGTC 469
Query 360 TCGTAACAGGGCTGATGAAATTATGAAGGTCGCTACGGAAACAGCTTCTAGGAAAGACGA 419
|||||||| |||| |||||||||||||||||||| ||| |||| |||| |||||||||
Sbjct 470 TCGTAACAAAGCTGGTGAAATTATGAAGGTCGCTAATGAAGCAGCATCTAAGAAAGACGA 529
Query 420 ATCACCGATGGAGACAGATCTTTCGGTAATTCCTCCGACAACTCTAAGACCAACAAAGCT 479
|| ||||||||||||||||||||||||||| |||||| ||||||||| | |||||||
Sbjct 530 GTCGTCGATGGAGACAGATCTTTCGGTAATTCTTCCGACCACTCTAAGA-C--CAAAGCT 586
Query 480 CTTTGGCCAGAATCTAGATGGAGATCTTCCCATCGCAAGGAGAAAATCACTGCAACGTTT 539
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 587 CTTTGGCCAGAATCTAGAAGGAGATCTTCCCATCGCAAGGAGAAAGTCACTGCAACGTTT 646
Query 540 TCTCGAGAAGCGCAAGGAGAGATTAGTATCAACATCTCCTTACTATCCGACATCGGCCTA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCTCGAGAAGCGCAAGGAGAGATTAGTATCAACATCTCCTTACTATCCGACATCGGCCTA 706
Query 600 AGCGATCTCTTTTTTAGATTGGGACATGGACCAAATTTGTCATTTTCAAT---------T 650
| |||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 707 AACGATCTCTTTTT-AGATTGGGACATGGACCAAATTTGTCTTTTTCAATCGGAAGACAT 765
Query 651 ---T-T--G-----G-ATTTGGCCTATTCCCAATCT-CTTTTGAAGACTTCTTCGTCGTT 697
| | | | ||||||| |||| ||||||| ||||||||| |||||||||||||
Sbjct 766 CCATGTTCGTTTTTGGATTTGGCTTATTTCCAATCTTCTTTTGAAGCCTTCTTCGTCGTT 825
Query 698 GCTAAATCGTATCCTATTCACGACA--CGTTTTTAGGAGATTACGTTACCTTCTAAGATt 755
|||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 826 GCTAAATCGTATACTATTCACGACAAACGTTTTTAGGAGATTACGTTACCTACTAAGATT 885
Query 756 atatatatataGTATTGtttttttAAATGTTTATTATCTTTAATGTCATTCACA-CTTTG 814
|||||||| | || |||||||| |||||| ||||||||||| ||||||| | | ||| |
Sbjct 886 ATATATAT-TGGT-TTGTTTTTAAAAATGTCTATTATCTTTATTGTCATTGATAGCTT-G 942
Query 815 ATTGAAGAAGCTCTCTGTTATCTCGTGACAT-CTACTCTTGTTTTATTT 862
||| |||||||||||| ||||| |||||| | ||||| |||||||||||
Sbjct 943 ATTTAAGAAGCTCTCTCTTATCCCGTGACCTTCTACTTTTGTTTTATTT 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42045981039
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5