BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488140
Length=974
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13240.1 | Symbols: | transcription regulators | chr5:42250... 1384 0.0
> AT5G13240.1 | Symbols: | transcription regulators | chr5:4225005-4227613
REVERSE LENGTH=1058
Length=1058
Score = 1384 bits (749), Expect = 0.0
Identities = 912/984 (93%), Gaps = 38/984 (4%)
Strand=Plus/Plus
Query 22 CGTTTTTTCAGGTGTATCATTGTTTATCGCATCTTTCTGGAGGATCTAGCCGCTACTACT 81
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 68 CGTTTTTTCAGGTTTATCATTGTTTATCGCATCTTTCTGGAGGATCTAGCCG---CTGCT 124
Query 82 ATCATGAAGTTCTTGGAGTACACTAACCTAGACAGATTGAATGTTTTTCTGGGTCATCTA 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 ATCATGAAGTTCTTGGAGTACACTAACCTAGACAGATTGAATGTTTTTCTGGGTCATCTT 184
Query 142 AATCTCGGGGAAAGAACTATCAAAGGTTGCTTGGAAGCCTACTCTTGCAAACATGCAGGA 201
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 185 AATCTCGGGGAAAGGACTATCAAAGGTTGCTTGGAAGCTTATTCTTGCAAACATGCAGGA 244
Query 202 TCTGATAAAAGATTGTCTCTTAGTTTGGAGAATGAGATGCTCGATTATCTTGGGAAATCG 261
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 245 AGTGATAAAAGATTGTCTCTTAGTTTGGAGAATGAGATGCTTGATTATCTTGGGAAATCT 304
Query 262 TCTGACACTGACTCTTCTTCACCCGTTGATCTCTTGTTAAGCAGATCAAGTCGAAAGGCT 321
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 305 TCTGACACCGACTCTTCTTCACCCGTTGATCTCTTGTTAAGCAGATCAAGTCGAAAGGCT 364
Query 322 TTGATCTACTTGGTTCTTACGCTCTATCAGATGTATCCGGACTACGATTTCAGCGCTGTG 381
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 365 TTGATCTACTTGGTTCTTACGCTCTATCAAATGTATCCGGACTACGATTTCAGCGCTGTC 424
Query 382 AAAGCACATCAGtttttttCGGAGGAAAGCTGGGACACGTTTAAGCAGATTTTTAACAAC 441
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 425 AAAGCACATCAGTTTTTCTCGGAGGAAAGCTGGGACACCTTTAAGCAGATTTTTAACAAC 484
Query 442 TATATGTTTGAAGCTTCTAAGGAATGGACTGAGAAGAATGAGGATGGTTCCCTTCTTGAG 501
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 485 TATATGTTTGAAGCTTCTAAGGAATGGACTGAGAGGAATGAGGATGGTTCCCTTCTTGAG 544
Query 502 GTGATCTACAAGGCTCTTGATGAGGTTGTAAAACTAGCAGAATGTGAGATATATGTTTAC 561
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 545 GTGATCTACAAGGCTCTTGATGAGGTCGTAAAACTAGCTGAATGTGAGATATATGTTTAC 604
Query 562 AACCCAAATCCTAATGCTGATCCGTTCCTAGAGGAAGGAGCAATATGGTCTTTCTGTTTC 621
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 605 AATCCAAATCCTAATGCTGATCCTTTCCTCGAGGAAGGAGCAATATGGTCTTTCTGTTTC 664
Query 622 TTATTCTACAACCGAAAACTGAAGCGCGTTGCGGGTTTTCGTTTCTGCTGCACGAGTAAC 681
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 665 TTATTCTACAACCGAAAACTGAAGCGCGTTGCGGGTTTTCGTTTCTCCTGCACGAGTAAC 724
Query 682 CTGGCAAGTGATGCATTTCTCACTGACAGTCCTCCGTATGGAGAAGATGAAGAGATCTTT 741
||||||| ||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct 725 CTGGCAAATGATGCATTTCTCACTGACAGTCCTCCATATGAAGAGGATGAAGAGATCTTT 784
Query 742 GCCGACATGGATATGTAATCTCTGTATCGTTAAGCTGAGT-A-A-A--C--------C-T 787
|||||||||||||||| ||||||||||||||| ||||||| | | | | | |
Sbjct 785 GCCGACATGGATATGTGATCTCTGTATCGTTATGCTGAGTCACATATTCTGTGGAAACCT 844
Query 788 GTATCTATGTG--T--G----ATCTCTAGTCTCTAGGCTTGTATGAGTCCGAGTC----- 834
||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 845 GTATCTATGTGACTATGTGTGATCTCTAGTCTCTAGGCTTGTATGAGTCCGAGTCGAAGT 904
Query 835 C-AAGGTTAAGCTCTTTGCTTTCCTTTATCTGTGTAGTTGACCTGACTA--A-TAATACT 890
| |||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||
Sbjct 905 CCAAGGTTAAGCTCTTCGCTTTCCTTTATCTGTGTAGTTGACGTGACTACTAATAATACT 964
Query 891 CTGTACT--GTCATGTGCAAA-AGCTTATCAGGCATTGTCGTAATCTTTTGTACCTAAAT 947
||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 965 CTGTACTATGTCATGTGCAAATA-CTTATCAGGCATTGTCGTAATCTAATGTACCTAAAT 1023
Query 948 TCAACTGAAGAGACAAAGAGTTGA 971
||||||||||||| ||| ||||||
Sbjct 1024 TCAACTGAAGAGAAAAAAAGTTGA 1047
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47672205503
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5