BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488149
Length=1487
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2036 0.0
> AT5G13310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures;
EXPRESSED DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G13970.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:4263493-4265337 FORWARD LENGTH=1529
Length=1529
Score = 2036 bits (1102), Expect = 0.0
Identities = 1368/1495 (92%), Gaps = 24/1495 (2%)
Strand=Plus/Plus
Query 1 TCACACCAATCGATTTGTGTGTGTTTCAATTTCTTATTGCTTCCCTTCCCAATGGCGTCG 60
||||| |||||||||||||||||||||||||||| || | |||| ||||||| |||
Sbjct 23 TCACAGCAATCGATTTGTGTGTGTTTCAATTTCTAATAG-----CTTCACAATGGCATCG 77
Query 61 TCTGGATCGGCCGACGATGATTTCCAGTCTCGCGTTGCGAAGATCTTTGGGTCTCTCCCC 120
|||||||| |||||||| ||||||||||||||||||||||||||||| || ||||| |||
Sbjct 78 TCTGGATCAGCCGACGAAGATTTCCAGTCTCGCGTTGCGAAGATCTTCGGATCTCTACCC 137
Query 121 TTCTCTCGTCCTTCGTCTTCCAAGTTTTCTA---CATCTTCTACTCCGGCGTCGCGGCAA 177
||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||
Sbjct 138 TTCTCTCGTCCTTCGTCTTCCAAGTTTTCCACGTCGTCTTCTGCTCCGGCGTCGCGGCAG 197
Query 178 CAATCGGGGTCGGTGTGGACTCTCTCCGATACACAAGTAGAGAAGCGGGAATGGAAGCGA 237
||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||
Sbjct 198 CAATCGGGGTCGGTGTGGACTCTCTCCGACACAGAGGTAGAGAAGCGGGAGTGGAAGCGA 257
Query 238 GATTCGTACGATAGAGACGAGATTCCTTGTGTTTCATCGTTCGATGAGCTGTTGAGACAA 297
||||||||||||||||||||||||||||||| |||||| || || ||||| || | |||
Sbjct 258 GATTCGTACGATAGAGACGAGATTCCTTGTGCTTCATCCTTTGACGAGCTCTTAAAACAG 317
Query 298 CAGAAGCCTTTAGAGGATGATCTCAAAGATATCGATTGCGGCGAGGATTTTGATGGTGAG 357
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 318 CAGAAGCCTTCCGAGGATGATCTCAAAGATATTGATTGCGGCGAGGATTTTGATGGTGTG 377
Query 358 TGGAGTATCAGAGCCTCCATGGGACTTGACCGCACTCTCGATGACGAGGCAGAGGAAGAT 417
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 378 TGGAGTATCAGAGCCTCCATGGGCCTTGATCGCACTCTCGATGACGAGGCAGAGGAAGAT 437
Query 418 GAGTATGATAAAGTCGCACTAGGGGAAGTGAATGACGGTGAAGG-TGAAGGCTTG-TCTC 475
|||||||||||||| ||||||||||||| ||||||||||||||| || ||| | | ||
Sbjct 438 GAGTATGATAAAGTTGCACTAGGGGAAGAGAATGACGGTGAAGGCTGTGGGC-GGAT-TC 495
Query 476 GGGATCCTCGTGCTAACTATGTTGCTGCAAGAATTAGGCTGAACGAAGACGCAATCGAGG 535
||||||||||||||||||||||||||||||||||||||||||| ||||| | ||| ||||
Sbjct 496 GGGATCCTCGTGCTAACTATGTTGCTGCAAGAATTAGGCTGAAGGAAGATGAAATTGAGG 555
Query 536 CCAACAAATTTAATACTTCTGCCAGTCAACCTGCGAAAAGCAAAGAGCCACACACAGAAG 595
| ||||| |||||||||||||| ||||||||| || ||||||||||||||||| ||||||
Sbjct 556 CTAACAAGTTTAATACTTCTGCAAGTCAACCTTCGGAAAGCAAAGAGCCACACGCAGAAG 615
Query 596 AATCATCCGAAGCCGTGCCGCGAAAACCTATACTAAAAAGGAAGGAGAATAGTTCAGATT 655
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 616 AATCATCCGAAGCTATGCCGCGAAAACCTATACTCAAAAGGAAGGAGAATAGTTCAGATT 675
Query 656 CAGAAGGAAGGACAAGTAAGCGAGTCAGGTTTGATTTTGTGTCTGAAGAAACATCAAAGA 715
|||||| ||||||||||||||||||||||||||||| |||| |||||||||||| ||||
Sbjct 676 CAGAAGCAAGGACAAGTAAGCGAGTCAGGTTTGATTCTGTGCCTGAAGAAACATTGAAGA 735
Query 716 AACCTGAACATACATGTTCAGCTTCTGCCTCCTCAACAAGCGTATATCATCAGGGTAAAA 775
| |||||| |||| ||||||||||||||||| |||| || ||||| ||||||||| ||||
Sbjct 736 AGCCTGAAGATACTTGTTCAGCTTCTGCCTCGTCAAAAATCGTATCTCATCAGGGAAAAA 795
Query 776 GTGGTGCTCGGGTACCAGATTACTTGGTAAATCCTGCGAGTTACACCCGTTACAGCTTTG 835
|||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 796 GTGGTGCTCGGGTACCGGATTACTTGCTAAATCCTTCGAGTTACACCCGTTACAGCTTTG 855
Query 836 ATCCATCTTGCGAATTGAATGAGAAGTCCCCAACAGGAGAATACATGGACACTCCCAAGG 895
|||||||||| |||||| ||| | |||||||||||||||| ||||||||||||||||| |
Sbjct 856 ATCCATCTTGTGAATTGGATGTGGAGTCCCCAACAGGAGAGTACATGGACACTCCCAATG 915
Query 896 CTGTTGAAGGATT-AAAAACTCCAGAGTCAGAATCA-TTCTCAAAAGTCTCTTTTATTCC 953
||||||||||||| ||||| |||||||||||||||| ||| |||||||||| ||||||||
Sbjct 916 CTGTTGAAGGATTGAAAAA-TCCAGAGTCAGAATCATTTC-CAAAAGTCTCCTTTATTCC 973
Query 954 ACAGAAGAAGACCAAGGACGTAAGAGAAGACAGCAGTAACTGTAGTGAGACGAAGCCTGT 1013
||||| ||||||||||||||||| |||||||| |||||||||| ||||||||||||| |
Sbjct 974 GCAGAATAAGACCAAGGACGTAAGTGAAGACAGTAGTAACTGTAATGAGACGAAGCCTAT 1033
Query 1014 TGTAGCTGGAGAGTTGGCAGAAGAAGAGAGACCAAGTGCAACAGAAGATGGGGATACTGA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1034 CGTAGCTGGAGAGTTGGCAGAAGAAGAGAGACCAAGTGCAACAGAAGATGGGGATACTGA 1093
Query 1074 AGTAGGAGAATCAGAGAGCTGCACCAGTTTCCAAAGGAAAGGTCGTCAATATCGCGCTAA 1133
| || ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 1094 AATACGAGAATCAGAGAGCTGCACCAGTTTCCAAAGCAAAGGTCGTCAATATCGTGCCAA 1153
Query 1134 GCAAAGTTTAGATGAAACAGCTGTCTGATCTTTCACATACCAGTT-GGTTGGAAAACGCT 1192
|| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1154 GCTTAGTTTAGATGAAACAGATGTCTGATCTTTCACATACCAGTTTGGTTGGAAAACGCT 1213
Query 1193 ACACAGAGATGAAGTTGGGGTCCATGAGATACAAACATGTAGCATCTTTTAGCAGTACAT 1252
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||
Sbjct 1214 ACACAGAGATGAAGTTGGGGTCCATGAGATACAATCATGTAGCATCTTTTAGCCGCACAT 1273
Query 1253 GTAAGATATTTTTAATTCCTAGACCTCTTTTTTACCCAATTTAGAGACTATATTACAGCG 1312
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1274 GTAAGATATTTTTAATTCCTAGACTTCTTTTTTACCCAATTTAGAGACTGTATTACAGCG 1333
Query 1313 AATGTATGGTAACATAGTAAGAAACAGTTTACCTTCCTCGAAGAGACTGGTTGATAGAAC 1372
||||||||||||||||||||||||| ||||||||| | || || ||||||||||| ||
Sbjct 1334 AATGTATGGTAACATAGTAAGAAACTGTTTACCTT--T-GA-GA--CTGGTTGATAGTAC 1387
Query 1373 ACGCAGAAGAGAATCTAAAGCTACCTCAACTTCCTCGAAGCAATCTTGATAGATCACCAG 1432
||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 1388 ACGCAGAAGAGAATCTAAAGCTACCTCAACTTCCTGGAAGCTATCTTGATAGATT-CCAG 1446
Query 1433 AGATGTTGCCACAAGTTTGGTTTCAACACTAGTGAATCGCTTATGGGAAGATTCC 1487
||||||||||||||||| | |||||||||||||||||| || ||||||||||||
Sbjct 1447 TGATGTTGCCACAAGTTTTGATTCAACACTAGTGAATCGTTTCTGGGAAGATTCC 1501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73342996245
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5