BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488151
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13330.1 | Symbols: Rap2.6L | related to AP2 6l | chr5:42720... 1500 0.0
> AT5G13330.1 | Symbols: Rap2.6L | related to AP2 6l | chr5:4272060-4274660
FORWARD LENGTH=1162
Length=1162
Score = 1500 bits (812), Expect = 0.0
Identities = 1009/1102 (92%), Gaps = 21/1102 (2%)
Strand=Plus/Plus
Query 40 TTGTTGTTCATCACCAAGCCAAGCTCCATGGCCTAGTCACTCCGCAGAATCCC--T-GTC 96
|||||||||||||||||||||||||||||| |||||||||||| |||| |||| | ||
Sbjct 52 TTGTTGTTCATCACCAAGCCAAGCTCCATGTCCTAGTCACTCCACAGATTCCCTATCATC 111
Query 97 ATCAATTC-ATTCAAACTTAGTTCCTTTCGAATTCTTGTACATATATATATACACACTCG 155
|||||||| ||||||||||||||||||| || ||||||||||||||| | |||||| |
Sbjct 112 ATCAATTCGTTTCAAACTTAGTTCCTTTCAAAGTCTTGTACATATATACACACACAC-C- 169
Query 156 TGTTGTTCTCTCGgtgtgtgtgtgtgtTACATATCCGTGTGAATAC--AGTTTGTTGTAA 213
| || |||||| ||||||| |||||||||||||| ||||||| ||| | ||||||||||
Sbjct 170 TATTATTCTCTTGGTGTGTTTGTGTGTTACATATACGTGTGAGTACATACTTTGTTGTAA 229
Query 214 AAGTGGATCGGAGGTATGGAAAGGGACCGGTTCCACAGGAAACATCGGCGGCGGCGGATG 273
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 230 AAGTGGATCGGAGGTATGGAAAGGGACCGGTTCCACCGGAAACATCGGCGGCGGCGGATG 289
Query 274 AGAATCCATCTTGGAACGAGACTGATGTCAACGCCATGGTCTCCGCTCTCAGCCGTGTCA 333
| ||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 290 ATAATTCGTCTTGGAACGAGACTGATGTCACCGCCATGGTCTCCGCTCTCAGCCGTGTCA 349
Query 334 TCGAGAATCCGACAGACCCGCCGGTCAAACAAGAGCTTGATAAATCGGATCAACTTCAAC 393
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 350 TAGAGAATCCGACAGACCCGCCGGTCAAACAAGAGCTTGATAAATCGGATCAACATCAAC 409
Query 394 AAGACCAAGATCAACCAAGAAGAAGACACTATAGAGGCGTAAGGCAGCGACCATGGGGCA 453
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 410 CAGACCAAGATCAACCAAGAAGAAGACACTATAGAGGCGTAAGGCAGAGACCATGGGGTA 469
Query 454 AATGGGCGGCTGAAATCCGTGATCCAAAGAAAGCAGCCCGTGTCTGGCTCGGGACTTTCG 513
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 470 AATGGGCGGCAGAAATCCGCGATCCAAAGAAAGCAGCCCGTGTCTGGCTCGGGACTTTCG 529
Query 514 AGACAGCAGAGGAAGCTGCTTTAGCCTACGACCGAGCCGCCCTCAAATTCAAAGGTACCA 573
|||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct 530 AGACGGCAGAGGAAGCTGCTTTAGCCTATGACCGAGCTGCCCTCAAATTCAAAGGCACCA 589
Query 574 AGGCTAAACTAAACTTCCCTGAACGGGTCCAAGGCCCTACTACCACGACAACCATTGATC 633
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 590 AGGCTAAACTGAACTTCCCTGAACGGGTCCAAGGCCCTACTACCACCACAACCATTTCTC 649
Query 634 ATGCATCAAGAAGAGTTAGTGAATCAATGAACTCGCCTCCTATTCGGCCTGGTCCACCTT 693
||||| ||||| ||||||||||||| |||||||| |||||| ||| ||||||||||| |
Sbjct 650 ATGCACCAAGAGGAGTTAGTGAATCCATGAACTCACCTCCTCCTCGACCTGGTCCACC-T 708
Query 694 ctactactactactactactTCGTGGCCAATGACGTATAACCAGGACATACTTCAATACG 753
| | | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 709 -T-C-A--ACTACTACTACTTCGTGGCCAATGACTTATAACCAGGACATACTTCAATACG 763
Query 754 CTCAGTTGCTTACGAGTAACAATGAGGTTGATTTATCGTACTACACGTCGAGTCTCTTCA 813
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 764 CTCAGTTGCTTACGAGTAACAATGAGGTTGATTTATCATACTACACGTCGACTCTCTTCA 823
Query 814 GTCAGCCTTTCTCTACTCCTTCTTCATCTTCTTCTTCCTCCcaacagacgcagcagcagc 873
|||| ||||| || || |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 824 GTCAACCTTTTTCAACGCCTTCTTCATCTTCTTCTTCCTCCCAACAGACGCAGCAACAGC 883
Query 874 aacaacaacaacaacagcaacagcGTGAAGAAGAAGAGAAGAGCTATGGTTACCATTATT 933
| | |||||||||||| || |||||||||||||||||||||| ||||||||| ||||||
Sbjct 884 AGCTACAACAACAACAACAGCAGCGTGAAGAAGAAGAGAAGAATTATGGTTACAATTATT 943
Query 934 ATAACCACCCAAGAGAATAATCTAATTATTATTGTCGGTCGAATCAGTTTTATAAATCGC 993
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 944 ATAACTACCCAAGAGAATAATCTAATTATTATTGTTGGTCGAATCAGTTTTATAAATAGC 1003
Query 994 TACCATTTTCGTTTCATTTTTGGTTTCCGTAACCGTTGTTGCATGGGAAATATGAATGAA 1053
|| ||| |||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1004 TATCATA---GTTTCATTTTTGGTTTCCGTAACCTTTGTTGCATGGAAAATATGAATGAA 1060
Query 1054 CGAGACACGTGTGTAACAATTTGTTTTTGTTTCGTAATTGTTAGTTAAATTTGGATTTGC 1113
|||| || ||||||||||||||||| |||||||||| |||||||| ||||||||||||
Sbjct 1061 CGAGGGACATGTGTAACAATTTGTTTGTGTTTCGTAAATGTTAGTTGTATTTGGATTTGC 1120
Query 1114 ATGCAGAAGTTTGATTTTCTGA 1135
|| | | ||||||||||||||
Sbjct 1121 -TG-A-A-GTTTGATTTTCTGA 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5