BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488152
Length=769
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1266 0.0
> AT5G13340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein
match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast
hits to 1807 proteins in 277 species: Archae - 0; Bacteria
- 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4277939-4279446
REVERSE LENGTH=778
Length=778
Score = 1266 bits (685), Expect = 0.0
Identities = 742/770 (96%), Gaps = 2/770 (0%)
Strand=Plus/Plus
Query 1 AGAAATCAA-TTGACCCAATCAAATCATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 59
||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 10 AGAAATCAATTTGA-CCAATCAAATAATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 68
Query 60 GATCTAGGTCGCCGTCTCACCGCCGACGATACTCTCGCTCGCCTGTTACTCATCGTAGCA 119
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 69 GATCTAGGTCGCCGTCTCACCGCCGACGGTACTCTCGCTCGCCTGTGACTCATCGTAGCA 128
Query 120 GCCGTCGTAGCAGGCGTGACCGCAGCCGCTCACCCTACACATCAAGGCACAAGAAGAGCA 179
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 129 GCCGTCGTACCAGGCGCGACCGCAGCCGCTCACCCTACACATCAAGGCATAAGAAGAGCA 188
Query 180 GATCTCCTACACCGAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 239
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GATCTCCTGCACCAAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 248
Query 240 ATAAAATTGCGATTGAAGCaaaaaaaGAACAGGAAGACAAGGCAAGACTGCAGCATGAGG 299
||| |||||||||||||| || |||||||||||||||||||||||| ||||||||||||
Sbjct 249 ATAGAATTGCGATTGAAGTGAAGAAAGAACAGGAAGACAAGGCAAGATTGCAGCATGAGG 308
Query 300 CTGAGCTCAAACGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 359
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGGAGCTCAAGCGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 368
Query 360 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 369 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 428
Query 420 AAGCCTATGAAAAGATGTTTCTTGATGTGGAAATACAGCTgaagaaagaaaaggaagctg 479
|||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 429 AAGCTTATGAGAAGATGTTTCTTGACGTGGAAATACAGCTGAAGAAAGAAAAAGAAGCTG 488
Query 480 ctctaaacgaggcaagaagaaaagaagaacaagctaggagagaaagagaagagctggata 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 CTCTAAACGAGGCAAGAAGAAAAGAAGAACAAGCTAGGAGAGAAAGAGAAGAGCTGGATA 548
Query 540 agatgttagaagaaaaTAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 AGATGTTAGAAGAAAATAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 608
Query 600 TTCAACGTAAAGAAGAGGAAAGATATAGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGG 659
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 609 TTCAACGTAAAGAAGAGGAAAGGTATCGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGG 668
Query 660 AAGCTGCAAGGAGaaaaaaaCTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGTTAT 719
| |||||||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct 669 AGGCTGCAAGGAGAAAGAAGCTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGCTAT 728
Query 720 CGAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 769
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CAAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 778
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37374205368
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5