BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488152 Length=769 Score E Sequences producing significant alignments: (Bits) Value AT5G13340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1266 0.0 > AT5G13340.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G10890.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4277939-4279446 REVERSE LENGTH=778 Length=778 Score = 1266 bits (685), Expect = 0.0 Identities = 742/770 (96%), Gaps = 2/770 (0%) Strand=Plus/Plus Query 1 AGAAATCAA-TTGACCCAATCAAATCATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 59 ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 10 AGAAATCAATTTGA-CCAATCAAATAATTGCGGTGGTGAAAATGGCTCGAAACGACTCGC 68 Query 60 GATCTAGGTCGCCGTCTCACCGCCGACGATACTCTCGCTCGCCTGTTACTCATCGTAGCA 119 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 69 GATCTAGGTCGCCGTCTCACCGCCGACGGTACTCTCGCTCGCCTGTGACTCATCGTAGCA 128 Query 120 GCCGTCGTAGCAGGCGTGACCGCAGCCGCTCACCCTACACATCAAGGCACAAGAAGAGCA 179 ||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 129 GCCGTCGTACCAGGCGCGACCGCAGCCGCTCACCCTACACATCAAGGCATAAGAAGAGCA 188 Query 180 GATCTCCTACACCGAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 239 |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 189 GATCTCCTGCACCAAGGCAACACCAAAGGGATAGAAGTAGTTCATTGTCTCCTTCCGAGC 248 Query 240 ATAAAATTGCGATTGAAGCaaaaaaaGAACAGGAAGACAAGGCAAGACTGCAGCATGAGG 299 ||| |||||||||||||| || |||||||||||||||||||||||| |||||||||||| Sbjct 249 ATAGAATTGCGATTGAAGTGAAGAAAGAACAGGAAGACAAGGCAAGATTGCAGCATGAGG 308 Query 300 CTGAGCTCAAACGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 359 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 309 CGGAGCTCAAGCGACTAGAAGAAGAGACTGCACAGCGGATTGAGGAAGCAGTAAGGAAAA 368 Query 360 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 369 ATGTAGAGGAAAGGATGAAAACCGAAGAAGTTAAAGAAGAAATTGAAAGACGGACAAAGG 428 Query 420 AAGCCTATGAAAAGATGTTTCTTGATGTGGAAATACAGCTgaagaaagaaaaggaagctg 479 |||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 429 AAGCTTATGAGAAGATGTTTCTTGACGTGGAAATACAGCTGAAGAAAGAAAAAGAAGCTG 488 Query 480 ctctaaacgaggcaagaagaaaagaagaacaagctaggagagaaagagaagagctggata 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 CTCTAAACGAGGCAAGAAGAAAAGAAGAACAAGCTAGGAGAGAAAGAGAAGAGCTGGATA 548 Query 540 agatgttagaagaaaaTAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 599 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 549 AGATGTTAGAAGAAAATAGTAGGAGGGTTGAAGAATCTCAAAGGCGAGAAGCAATGGAAC 608 Query 600 TTCAACGTAAAGAAGAGGAAAGATATAGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGG 659 |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| Sbjct 609 TTCAACGTAAAGAAGAGGAAAGGTATCGAGAATTGGAGCTCCTGCAGAGACAGAAGGAGG 668 Query 660 AAGCTGCAAGGAGaaaaaaaCTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGTTAT 719 | |||||||||||||| || |||||||||||||||||||||||||||||||||||| ||| Sbjct 669 AGGCTGCAAGGAGAAAGAAGCTGGAAGAAGAAGAAGAGATTAGAAACTCCAGCAAGCTAT 728 Query 720 CGAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 769 | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 729 CAAATGGAAACAGATCACGATCCAAGCTGCATTTCGGCATGGGTTTATAA 778 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37374205368 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5