BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488159
Length=2147
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13400.1 | Symbols: | Major facilitator superfamily protein... 3408 0.0
> AT5G13400.1 | Symbols: | Major facilitator superfamily protein
| chr5:4296688-4299223 REVERSE LENGTH=2185
Length=2185
Score = 3408 bits (1845), Expect = 0.0
Identities = 2021/2107 (96%), Gaps = 7/2107 (0%)
Strand=Plus/Plus
Query 44 GCTGTTTTTGTTCACTGTAAAGCTTTCGA-TTTCCATGGTTTTATGAGATAATATCA-AG 101
|||||||||| ||||| | | |||||| | ||||||||||||||||||| ||||||| |
Sbjct 83 GCTGTTTTTGGTCACTCTGATGCTTTC-AGTTTCCATGGTTTTATGAGAAAATATCATTG 141
Query 102 ATTATGGTTGCTTCTGAGATTAAATCCCCTGTGAGTGTCCCCGAGACGCCGGGAAGCTCC 161
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 142 ATTATGGTTGCTTCTGAGATTAAATCCCCGGTGAGTGTCCCCGAGACTCCGGGAAGCTCC 201
Query 162 TCTGTGCATCATAGGAAGCAGTTGAGTGTGTTCTTCATAGAGTCAGATAACAGACGTCTT 221
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 202 TCTGTGCATCATAGGAAGCAGTTGAGTGTGTTCTTCATAGAATCAGATAACAGACGTCTT 261
Query 222 GCTCTTGGCCGCGGCTATACAGGAGGAACCACTCCGGTTAACATCCATGGCAAACCCATC 281
||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 262 GCTCTTGGCCGTGGCTATACCGGAGGAACCACTCCCGTTAACATCCATGGCAAACCCATC 321
Query 282 GCCAATCTTTCCAAAACCGGTGGTTGGATCGCAGCTCTCTTCATTTTTGGAAATGAAATG 341
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 322 GCCAATCTTTCCAAAACCGGTGGTTGGATCGCAGCTTTCTTCATTTTTGGAAATGAAATG 381
Query 342 GCCGAGAGAATGGCGTATTTCGGACTATCCGTGAACATGGTGGCGTTCATGTTCTATGTA 401
|| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 382 GCAGAGAGAATGGCGTATTTCGGACTCTCGGTGAACATGGTGGCGTTCATGTTCTACGTA 441
Query 402 ATGCATAGGCCTTTTGAGAGCTCATCAAACGCAGTCAACAACTTCCTTGGCATCTCTCAA 461
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 442 ATGCATAGGCCTTTTGAAAGTTCATCAAACGCAGTCAACAACTTCCTTGGCATCTCTCAA 501
Query 462 GCCTCCTCTGTTTTTGGAGGCTTCTTAGCCGACGCTTACTTGGGTCGATACTGGACTATT 521
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 502 GCCTCCTCTGTTCTTGGAGGCTTCTTAGCCGACGCTTACTTGGGTCGATACTGGACTATT 561
Query 522 GCCATCTTCACTACCATGTATCTTGTCGTAAGTTTGATAGGAATAACACTGGGGGCTAGT 581
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||
Sbjct 562 GCCATCTTCACTACCATGTATCTTGTCG---GTTTGATAGGAATAACATTGGGGGCAAGT 618
Query 582 TTGAAGATGTTCGTACCAGACCAGAGCAACTGTGGCCAGTTATCATTGCTCTTAGGAAAT 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 TTGAAGATGTTCGTACCAGACCAGAGCAACTGTGGCCAGTTATCATTGCTCTTAGGAAAT 678
Query 642 TGTGAACCAGCCAAATCTTGGCAAATGCTTTATCTCTACACGGTTCTCTACATAACCGGA 701
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 679 TGTGAAGAAGCCAAATCTTGGCAAATGCTTTATCTCTACACGGTTCTCTACATAACCGGA 738
Query 702 TTCGGAGCTGCTGGTATAAGGCCATGTGTTTCCTCATTTGGTGCTGACCAGTTTGATGAG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 TTCGGAGCTGCTGGTATAAGGCCATGTGTTTCCTCATTTGGTGCTGACCAGTTTGATGAG 798
Query 762 AAGAGCAAAGACTATAAGACACATTTAGACCGTTTCTTCAACTTCTTCTATTTATCTGTC 821
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 799 AAGAGCAAAGACTACAAGACACATTTAGACCGTTTCTTCAACTTCTTCTATCTATCGGTC 858
Query 822 ACTTTAGGCGCAATCATTGCCTTCACTTTGGTGGTATATGTTCAAATGGAACTTGGTTGG 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 ACTTTAGGCGCAATCATTGCCTTCACTTTGGTGGTATATGTTCAAATGGAACTTGGTTGG 918
Query 882 GGTATGGCTTTTGGCACATTGGCCGTAGCTATGGGGATTTCTAATGCTTTGTTCTTTGCT 941
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 919 GGTATGGCTTTTGGCACATTGGCCGTAGCCATGGGGATTTCTAATGCTTTGTTCTTTGCT 978
Query 942 GGTACACCGCTTTATCGGCATAGGTTGCCTGGTGGTAGTCCCTTGACTAGGGTAGCTCAG 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 979 GGTACACCGCTTTATCGGCATAGGTTGCCTGGTGGTAGTCCCTTGACTAGGGTAGCTCAG 1038
Query 1002 GTCTTAGTTGCCGCTTTCCGCAAACGAAATGCAGCTTTTACTAGCAGTGAATTCATCGGT 1061
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 1039 GTCTTAGTTGCCGCTTTCCGCAAACGAAATGCAGCTTTCACAAGCAGTGAGTTCATCGGT 1098
Query 1062 CTTTACGAAGTTCCGGGCTTGAAATCTGCTATTAATGGCAGTCGTAAAATCCCTCATTCC 1121
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CTTTACGAAGTTCCTGGCTTGAAATCTGCTATTAATGGCAGTCGTAAAATCCCTCATTCC 1158
Query 1122 GATGATTTCATATGGCTAGACAAGGCGGCACTTCAGTTGAAAGAAGATGGATTGGAGCCA 1181
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1159 AATGATTTCATATGGCTAGACAAGGCGGCACTTGAGTTGAAAGAAGATGGATTGGAACCA 1218
Query 1182 TCTCCATGGAAGCTATGCACAGTAACACAAGTAGAGGAAGTGAAGATTCTGATCAGACTG 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1219 TCTCCATGGAAGCTATGCACAGTAACACAAGTAGAGGAAGTGAAGATTCTGATCAGATTG 1278
Query 1242 ATTCCAATCCCAGCATGCACTATAATGCTGAGTCTGGTCCTGACAGAGTATCTTACACTC 1301
|||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1279 ATTCCAATCCCAACATGCACTATAATGCTGAGTCTGGTCTTGACTGAGTATCTTACACTC 1338
Query 1302 TCAGTGCAACAAGCTTACACACTCAACACACACATTCAACACCTCAAGCTTCCAGTGACG 1361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1339 TCAGTGCAACAAGCTTACACACTCAACACACACATTCAACACCTCAAGCTTCCAGTGACC 1398
Query 1362 TGCATGCCAGTCTTCCCAGGCCTCAGCATTTTCCTCATACTCTCCCTTTATTACTCTGTC 1421
||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1399 TGCATGCCAGTTTTCCCAGGCCTAAGCATTTTCCTCATTCTCTCCCTTTATTACTCTGTC 1458
Query 1422 TTCGTCCCTATCACCAGAAGAATCACTGGCAATCCCCATGGTGCTTCCCAGCTTCAAAGA 1481
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1459 TTCGTCCCTATCACCAGAAGAATCACTGGCAATCCTCATGGTGCTTCCCAGCTTCAAAGA 1518
Query 1482 GTGGGCATAGGGTTAGCTGTTTCAATCATATCAGTAGCTTGGGCCGGACTATTTGAGAAC 1541
|||||||||||| |||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct 1519 GTGGGCATAGGGCTAGCAGTTTCAATCATATCAGTAGCTTGGGCTGGGCTATTCGAGAAC 1578
Query 1542 TACAGGAGACATTACGCGATACAACATGGTTTTGAGTTCAACTTCTTGACCCAAATGCCT 1601
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1579 TACAGGAGACATTACGCGATACAAAATGGTTTTGAGTTCAACTTCTTGACCCAAATGCCT 1638
Query 1602 GATCTAACCGCGTACTGGTTGTTAATCCAGTACTGTCTCATCGGAATCGCAGAGGTTTTC 1661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 GATCTAACCGCGTACTGGTTGTTAATCCAGTACTGTCTCATCGGAATCGCAGAGGTTTTC 1698
Query 1662 TGCATCGTAGGGCTATTGGAGTTCCTATACGAGGAAGCTCCTGATGCTATGAAGAGTATT 1721
||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1699 TGCATAGTAGGGCTATTGGAGTTCCTTTACGAGGAAGCTCCGGATGCTATGAAGAGTATT 1758
Query 1722 GGTTCGGCTTACGCTGCTTTAGCCGGCGGGCTAGGATGTTTTGCTGCCACCATTTTGAAC 1781
|||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1759 GGTTCGGCTTACGCTGCTCTAGCCGGCGGGTTAGGGTGTTTTGCTGCCACCATTTTGAAC 1818
Query 1782 AATATTGTCAAGGCTGCGACTCGGGACTCAGATGGGAAATCGTGGTTGTCGCAGAACATA 1841
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1819 AATATTGTCAAGGCTGCGACTCGGGACTCAGATGGGAAATCGTGGTTATCGCAGAACATA 1878
Query 1842 AACACGGGGAGATTCGACTGTTTGTACTGGTTGCTCACACTTCTGAGCTTTTTGAATTTC 1901
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1879 AACACGGGGAGATTCGACTGCTTGTACTGGTTGCTCACACTTCTGAGCTTTTTGAATTTC 1938
Query 1902 TGTGCGTTCCTTTGGTCAGCTCATAGGTACAAGTACAGGGCTATTGAGTCTGAGGAAGAC 1961
|||| ||||||||||||||| ||||||||||||||| | ||||| |||||||||||||||
Sbjct 1939 TGTGTGTTCCTTTGGTCAGCGCATAGGTACAAGTACCGAGCTATCGAGTCTGAGGAAGAC 1998
Query 1962 AAGAGTAGAGCTGTTCTTTAAATACACCACTTCTGTGTTCTCTTCTCATTATACTTTTTG 2021
|||||||| ||||||||||||| |||||||||||||||||||||||| |||| |||||||
Sbjct 1999 AAGAGTAGTGCTGTTCTTTAAAGACACCACTTCTGTGTTCTCTTCTCGTTATTCTTTTTG 2058
Query 2022 AAAAAATAGCAGTAATTGTATCTTCCTGTTTTGTTTTCCTATAGCTAATGTTTAAGCGTG 2081
| |||| ||||||||||||||| |||| |||| |||||||||||||||||||||| |||
Sbjct 2059 ATAAAACAGCAGTAATTGTATCATCCTACTTTGCTTTCCTATAGCTAATGTTTAAGGGTG 2118
Query 2082 GACAATCCGCTTAACGGGATTGTTCGTTTGTAAGAAGACCA-TAAAATTAAGTCCTTCAA 2140
|| |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 2119 GAAAATCCGCTAAACGTGATTGTTCGTTTGTAAGAAGACCAATAAAATTAAGTTGTTCAA 2178
Query 2141 ACGTCGT 2147
|||||||
Sbjct 2179 ACGTCGT 2185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106475355945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5