BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488161
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13420.1 | Symbols: | Aldolase-type TIM barrel family prote... 2460 0.0
> AT5G13420.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:4301792-4304312 REVERSE LENGTH=1705
Length=1705
Score = 2460 bits (1332), Expect = 0.0
Identities = 1511/1592 (95%), Gaps = 33/1592 (2%)
Strand=Plus/Plus
Query 1 AAAACTCCACCAACCCCATTTTT-AGCCCCTTTC-TTGTTTTTATCCTCCCATCGATCAA 58
|||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||
Sbjct 1 AAAACTTCACCAACCCCATTTTTAAGCCCCTTTCTTTGTTTTTATCCTCCGATCGATCAA 60
Query 59 ACCAAGAAAAAACTCTTTCATATTTCACC-CGACGAAAGAAATGGCAACCATTTCGAATC 117
||||||||||||| ||||| |||||| || |||||||| |||||||||||||||||||||
Sbjct 61 ACCAAGAAAAAACACTTTCGTATTTC-CCTCGACGAAAAAAATGGCAACCATTTCGAATC 119
Query 118 TCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTC-T--TC-T--TCCGTCT 171
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 120 TCGCTAATCTTCCCCGCGCCACCTGCGTCGACTCCAAATCTTCTTCCTCTTCCTCCGTCT 179
Query 172 TACCTAGATCCTTCGTTAATTTCCGCGGTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTT 231
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TACCTAGATCCTTCGTCAATTTCCGCGCTTTGAATGCAAAGCTTTCCTCTTCTCAGCTTT 239
Query 232 CTCTTCGTTATAACCAACGATCAAGACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTG 291
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 CTCTTCGTTATAACCAACGATCAATACCTTCCCTCTCTGTGAGGTGTTCAGTGTCTGGTG 299
Query 292 GAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGA 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GAAATGGAACTGCTGGAAAGAGAACGACTCTTCATGATCTATATGAGAAGGAAGGTCAGA 359
Query 352 GTCCTTGGTATGATAATCTATGCCGTCCAGTCACAGATCTTCTCCCCTTGATTGCTCGTG 411
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 360 GTCCTTGGTATGATAATCTTTGCCGTCCAGTCACAGATCTTCTCCCGTTGATTGCTCGTG 419
Query 412 GTGTTAGAGGCGTTACTAGCAACCCTGCGATCTTCCAGAAAGCCATTTCCACTTCTAATG 471
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 420 GTGTTAGAGGTGTTACTAGCAACCCTGCGATCTTCCAAAAAGCCATTTCCACTTCAAATG 479
Query 472 CTTATAATGATCAGTTCAGGACACTTGTGGAATCAGGAAAGGACATTGAAAGTGCGTATT 531
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 480 CTTATAATGATCAATTCAGGACACTTGTGGAATCGGGAAAGGACATTGAAAGTGCGTATT 539
Query 532 GGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACC 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GGGAACTTGTGGTGAAGGATATTCAGGATGCCTGCAAACTTTTTGAGCCAATCTATGACC 599
Query 592 AAACAGAAGGTGCTGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATA 651
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGACAGAAGGTGCGGATGGCTATGTCTCTGTTGAAGTTTCACCTAGGCTTGCTGATGATA 659
Query 652 CCCAAGGGACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCT 711
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 CCCAAGGAACTGTTGAAGCTGCTAAATATCTTAGCAAGGTTGTCAACCGTCGTAATGTCT 719
Query 712 ACATTAAGATCCCGGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCATCTG 771
|||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 ACATTAAGATTCCTGCTACTGCTCCATGCATTCCTTCCATCAGGGATGTCATTGCAGCTG 779
Query 772 GAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATG 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAATAAGTGTCAATGTCACGCTTATATTCTCAATCGCCAGATATGAAGCAGTGATCGATG 839
Query 832 CATATTTGGACGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTG 891
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CATATTTGGATGGCCTCGAGGCGTCTGGACTTGATGACCTCTCAAGAGTTACCAGTGTTG 899
Query 892 CTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTA 951
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CTTCCTTCTTTGTCAGTCGGGTGGATACTCTCATGGACAAGATGCTTGAGCAAATTGGTA 959
Query 952 CCCCTGAAGCCCTAGATCTCCGTGGCAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACA 1011
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 CCCCTGAAGCCTTAGATCTCCGTGGGAAGGCGGCTGTGGCTCAAGCTGCATTAGCATACA 1019
Query 1012 AGCTGTACCAGCAGAAATTCTCAGGCCCAAGATGGGAAGCTCTGGTTAAGAAAGGTGCCA 1071
|||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 1020 AGCTATACCAGCAGAAATTCTCTGGCCCAAGATGGGAAGCTCTGGTAAAGAAAGGTGCCA 1079
Query 1072 AGAAGCAGAGGCTTCTCTGGGCATCGACAAGTGTTAAGAACCCAGCTTACTCTGACACCT 1131
|||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1080 AGAAACAGAGACTTCTCTGGGCATCAACAAGTGTAAAGAACCCAGCTTACTCTGACACCT 1139
Query 1132 TATATGTCGCTCCTCTCATCGGACCTGACACTGTTTCAACCATGCCGGATCAAGCCCTGG 1191
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1140 TATATGTCGCTCCTCTCATCGGACCTGACACTGTATCAACCATGCCGGATCAAGCCCTGG 1199
Query 1192 AAGCATTTGCAGATCATGGAATCGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAG 1251
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1200 AAGCATTCGCAGATCATGGAATAGTGAAGAGGACAATAGATGCGAATGTGTCAGAAGCAG 1259
Query 1252 AAGGGATATACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGGGAACAGT 1311
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1260 AAGGGATTTACAGTGCACTAGAGAAGCTGGGAATAGACTGGAACAAAGTAGGAGAACAGT 1319
Query 1312 TGGAAGACGAAGGAGTAGATTCGTTCAAGAAGAGTTTCGAGAGCCTGCTAGGTACACTGC 1371
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1320 TGGAAGACGAAGGAGTAGATTCCTTCAAGAAGAGTTTCGAGAGTCTGCTCGGTACACTGC 1379
Query 1372 AAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGAGGA--T----CAT--T-ATGTT 1422
||||||||||||||||||||||||||||||||||||||||| | ||| | |||||
Sbjct 1380 AAGACAAGGCCAACACTCTCAAACTAGCCAGCCATTGAGGAAATGAGTCATCATTATGTT 1439
Query 1423 TTTGGTGGGTAAACCCTAAAATaaaaaaaGAAGAACCTTTGGCTTTTGTTCTTCAACCCT 1482
|||||| || | |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1440 TTTGGT---TA--CGCTAAAATAAAAA--GAAGAACCTTTGGCTTTTGTTCTTCAATCCT 1492
Query 1483 TATTATGTATGCTTTCTAAAGTTGTTATAATGGCTTTTGCTTGATGTTCCACATTATGAT 1542
||| | |||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 1493 TAT---GCATGCTTTCTAAAGTGGTTATGATGGATTTTGCTTGATGTTCCACATTATG-- 1547
Query 1543 GGGT-T-CTATCTTCTTTGTTCTTGCAAGATG 1572
|| | | |||| ||||||||||||| ||||||
Sbjct 1548 GGTTATTCTATTTTCTTTGTTCTTGTAAGATG 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5