BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488165
Length=1016
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13450.1 | Symbols: ATP5 | delta subunit of Mt ATP synthase ... 1580 0.0
> AT5G13450.1 | Symbols: ATP5 | delta subunit of Mt ATP synthase
| chr5:4310314-4312048 REVERSE LENGTH=1068
Length=1068
Score = 1580 bits (855), Expect = 0.0
Identities = 977/1032 (95%), Gaps = 24/1032 (2%)
Strand=Plus/Plus
Query 1 AAGTTATTTTCTTCCTCTGACCAGTTTCA------T-CTCT-----AAGCAGCTGATCGA 48
||||||||||||||||||||||||||||| | |||| |||||||||| |||
Sbjct 1 AAGTTATTTTCTTCCTCTGACCAGTTTCATCTCTTTGCTCTCGACAAAGCAGCTGAGCGA 60
Query 49 CTTCTGCTCATTTCTAGGGTTCCAATCAAAATCTATCTGCAACAAAAATGGCTTTGGCTA 108
||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CTTTTGCACATTTCTAGGGTTCCAATCAAAATCTATCTGCAACAAAAA------TGGCTA 114
Query 109 ATCGTTTCAGATC-GGGAATCTCCTTCTTCAAGAACATCGCCGTATCAGATTCTGTCTCC 167
||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||||||
Sbjct 115 ATCGTTTCAGATCAGGG-ATCTCCTTCTTCAAGACCATCGCCGTAACAGATTCTGTCTCC 173
Query 168 TCCGTTAGATCCAAGTCGCTTTTCCCAGCGTTGAGAAATTATGCAACTGCTTCGGCTCAA 227
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 174 TCCGTTAGATCCAAGTCGCTTTTCCCAGCGTTGAGAACTTATGCAACTGCTTCTGCTCAA 233
Query 228 GCAACCGCCAATGTTAAGGTGCCTATTGCTTTAGTTGGTGAAAATGGCAACTTTGCTTCG 287
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 234 ACAACCGCTAATGTTAAGGTGCCTATTGCTTTAGTTGGTGAAAATGGGAACTTTGCTTCA 293
Query 288 TGGCTATACATTGCAGCTGTGAAAATGAATTCCTTGGAAAAGATTGAGTCGGATCTTTCT 347
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 294 TGGCTATACATTGCAGCTGTGAAAATGAATTCCTTGGAAAAGATTGAGACGGATCTTTCT 353
Query 348 GAGATGATCGAGGCAATGAAGACTGCTCCTATTTTTGCTCAGTTTACAAAGGATCCCTCT 407
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 354 GAGATGATTGAGGCAATGAAGACAGCTCCTATTTTTGCTCAGTTTACAAAGGATCCCTCT 413
Query 408 GTTCCTAGAGGGACAAGATTGGCTGCTATTAGGGATGCTTGTGATCAAGCAAAGTTTGCA 467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GTTCCTAGAGGGACAAGATTGGCTGCTATTAGGGATGCTTGTGATCAAGCAAAGTTTGCC 473
Query 468 GAACCCACCAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGAAAGCTGAAGAACCTAGAT 527
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 GAACCCACTAAGAACTTCCTCTCTTTGTTAGCTGAGAATGGAAAGCTGAAGAACCTAGAT 533
Query 528 GCCATTGTGAAGAAATTTATGCAGCTGACAAACGCACACAGGGGAGATGTCAAAGTTTTG 587
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 534 GCCATTGTGAAGAAATTTATGCAGCTGACAAACGCACATAGGGGAGATGTCAAAGTTTTG 593
Query 588 GTTACCACAGTCATGCCGCTTCCCCCTGCTGAGGAGAAAGAACTGACGGAGACGCTTCAG 647
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 594 GTTACCACAGTCATTCCGCTTCCCCCTGCTGAGGAGAAAGAACTGACTGAGACGCTTCAG 653
Query 648 GAGATCATTGGAGCAGGGaaaaaaaTCACTGTGGAACAAAAGATTGATCCGAGTATCTAC 707
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 654 GAGATCATTGGAGCAGGGAAGAAAATCACTGTGGAACAAAAGATTGATCCAAGTATCTAC 713
Query 708 GGTGGGTTAATCGTAGAGTTCCAACAAAAGGTGTTGGACATGTCTATCAGGACAAGGGCA 767
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 714 GGTGGACTAATCGTAGAGTTCCAACAAAAGGTGTTGGACATGTCAATCAGGACAAGGGCA 773
Query 768 CAGCAGATGGAAAGGCTCCTCCGTGAACCTGTTGACTTCAACAACCTCTGAAAATCTTGA 827
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 CAACAGATGGAGAGGCTCCTCCGTGAACCTGTTGACTTCAACAACCTCTGAAAATCTTGA 833
Query 828 GAGAAATTTCCCC-AAGAAAACATGCTTGTGATGA-TGCCACCAATTGACAAATAAATAT 885
||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 834 GAGAAATTTCCCCCAAGAAAACATGCTTGTGATGAATGCCACCAATTGACAAATAAATAT 893
Query 886 GGACCCTCCTGGGAAACAATATA-TAGCTGGCCACTTATCTCGTTTTGAATTTTGTCATT 944
||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 894 GGACCCTCCTGGGAAACAATATAATAGCTGGCCACTTCTCTCCCTTTGAATTTTGTCATT 953
Query 945 TGCAATTTTACATTTTGTTGTTTGCTTCGAAATAAAGCTTTTCGAGACATCAAATTTCAA 1004
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TGCT-TTTTACATATTGTTGTTTGCTTCGAAATAAAGCTTTTCGAGACATCAAATTTCAA 1012
Query 1005 TGAGATTGTTTT 1016
||||||||||||
Sbjct 1013 TGAGATTGTTTT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49782039677
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5