BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488169
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13490.1 | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4335467-... 1927 0.0
AT3G08580.1 | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605442-... 1170 0.0
> AT5G13490.1 | Symbols: AAC2 | ADP/ATP carrier 2 | chr5:4335467-4337628
FORWARD LENGTH=1516
Length=1516
Score = 1927 bits (1043), Expect = 0.0
Identities = 1191/1259 (95%), Gaps = 23/1259 (2%)
Strand=Plus/Plus
Query 1 TTCTTCTTCGCTCAGCTCCGACAA-GAAAGGGCGAAGAATCTCTCGCTCCCTCAGTTTCG 59
|||||||||||||||||||||||| | |||||||||||| ||||||||||||| |||||
Sbjct 24 TTCTTCTTCGCTCAGCTCCGACAACG-AAGGGCGAAGAA--TCTCGCTCCCTCAATTTCG 80
Query 60 C-TTGGCCATCGATTTTCTTAGAGGTTAAAATGGTTGAACAGACTCAGCACCCCACGATT 118
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CATT-GCCATCGATTTTCTTAGAGGTTAAAATGGTTGAACAGACTCAGCACCCCACGATT 139
Query 119 CTGCAGAAGGCTTCTGGCCAAATCTTGCGTTCCG-GTGTTTCTCAGGACATTCGTGGTTA 177
|| ||||||| |||||||||| ||||| | | || |||||||||||||||||||||||||
Sbjct 140 CTTCAGAAGGTTTCTGGCCAACTCTTGAGCT-CGAGTGTTTCTCAGGACATTCGTGGTTA 198
Query 178 TGCTTCCGCTTTCC-AGAGGCCTGCCACATACCAGAGGCATGCAGCTTACGGAAACTACT 236
|||||| || |||| | |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 199 TGCTTCGGC-TTCCAAAAGGCCTGCTACATACCAGAAACATGCAGCTTACGGAAACTACT 257
Query 237 CCAATGCTGCATTCCAATATCCTCTTGTGGCTGCATCTCGA-ATTGCAACAACTACTTCT 295
||||||||||||| ||||||||||||||||||||||||| | |||||||| |||||||||
Sbjct 258 CCAATGCTGCATTTCAATATCCTCTTGTGGCTGCATCTC-AGATTGCAACTACTACTTCT 316
Query 296 CCCGTGTTTGTCCAAACTCCAGGAGAGAAAGGATTTACTAACTTTGCGATTGATTTCCTG 355
|| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||
Sbjct 317 CCTGTGTTTGTCCAAGCTCCAGGAGAGAAGGGATTTACTAACTTTGCTATTGATTTCATG 376
Query 356 ATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAG 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATGGGTGGTGTTTCTGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAG 436
Query 416 CTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGACTCT-CTGAGCCCTACAA 474
||||||||||||||||||||||||||||||||||||||||| || | ||||||| |||||
Sbjct 437 CTTTTGATTCAAAACCAGGATGAGATGCTTAAGGCTGGAAGGCT-TACTGAGCCATACAA 495
Query 475 GGGTATTGGTGACTGTTTCGGCAGGACAATTAAGGATGAAGGGT-TTGGTTC-TCTGTGG 532
||||||| |||||||||||||||||||||||| ||||||| ||| ||||||| | |||||
Sbjct 496 GGGTATTCGTGACTGTTTCGGCAGGACAATTAGGGATGAA-GGTATTGGTTCGT-TGTGG 553
Query 533 AGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTC 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 AGAGGAAACACCGCTAATGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTC 613
Query 593 AAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAGTGG 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 AAAGATTACTTCAAGAGGCTTTTCAACTTCAAGAAAGACAAGGATGGCTACTGGAAGTGG 673
Query 653 TTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGGGCCTCTTCCCTTCTCTTTGTGTAC 712
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 674 TTTGCTGGTAACTTGGCATCTGGAGGTGCTGCTGGTGCCTCTTCCCTTCTCTTTGTGTAC 733
Query 713 TCTCTTGACTATGCGCGTACCCGTCTTGCCAATGACTCCAAGTCTGCCAAGAAGGGAGG- 771
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 TCTCTTGACTATGCACGTACCCGTCTTGCCAATGACTCCAAGTCTGCCAAGAAGGGAGGA 793
Query 772 GG--AAAGGCAGTTCAATGGTTTTGTTGATGTCTACAAGAAGACCCTCAAGTCCGATGGT 829
|| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 794 GGTGAAAGGCAGTTCAATGGTCTTGTTGATGTCTACAAGAAGACCCTCAAGTCAGATGGT 853
Query 830 ATTGCTGGACTTTACCGTGGGTTCAACATCTCCTGTGCTGGTATCATTGTCTACCGTGGT 889
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 854 ATTGCTGGACTTTACCGTGGTTTCAACATCTCGTGTGCTGGTATCATTGTCTACCGTGGT 913
Query 890 CTTTACTTTGGACTGTACGACTCTGTGAAGCCTGTCCTCCTGACTGGTGACTTGCAGGAC 949
|| |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||
Sbjct 914 CTCTACTTTGGACTGTACGACTCTGTGAAGCCTGTCCTCCTCACTGGAGACCTGCAGGAC 973
Query 950 AGCTTCTTTGCTAGTTTTGCTCTTGGATGGCTCATCACTAATGGTGCGGGTCTTGCGTCC 1009
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 974 AGTTTCTTCGCTAGTTTTGCTCTTGGATGGCTCATCACCAATGGTGCGGGTCTTGCGTCG 1033
Query 1010 TACCCGATTGACACGGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCCGTGAAGTAC 1069
|||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct 1034 TACCCGATTGACACGGTTAGAAGAAGAATGATGATGACATCAGGTGAAGCGGTGAAGTAC 1093
Query 1070 AAAAGTTCGATG-GATGCGTTCTCACAGATCCTGAAGAAGGAAGGAGCCAGGTCTCTGTT 1128
|| || || || |||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 1094 AAGAGCTC-ATTTGATGCGTTCTCACAGATCGTGAAGAAGGAAGGAGCCAAGTCTCTGTT 1152
Query 1129 CAAGGGTGCTGGTGCCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTA 1188
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 CAAGGGTGCGGGTGCCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTA 1212
Query 1189 CGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAGTAC 1247
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1213 CGACAAGCTGCAGTTAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAGTAC 1271
Score = 80.5 bits (43), Expect = 4e-14
Identities = 49/52 (94%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1305 TATGGAATAAATTTTGTATGGGAGGGAGATTTGACTCCTTGGAAGCAAGCTA 1356
|||||||||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1435 TATGGAATAAATTTTGTATGGGAGGGAGATTTGACTCCTTCGAACCAGGCTA 1486
> AT3G08580.1 | Symbols: AAC1 | ADP/ATP carrier 1 | chr3:2605442-2607573
REVERSE LENGTH=1460
Length=1460
Score = 1170 bits (633), Expect = 0.0
Identities = 1006/1182 (85%), Gaps = 41/1182 (3%)
Strand=Plus/Plus
Query 79 AGAGGTT-AAAATGGTTGAAC-AGACTCAGCACCCCACGATT-CTGCAGAAGGCTTCTGG 135
||| ||| ||||||||||| | || |||||||||||| ||| | |||||| ||| | ||
Sbjct 41 AGA-GTTCAAAATGGTTGATCAAG-TTCAGCACCCCACTATTGC-GCAGAAAGCTGCCGG 97
Query 136 CCAAATCTTGCGTTCCGGTGTTTCTC-AGGACATTCGTGGTTATGCTTCCGCTTTCCAGA 194
|| || ||||||| ||||||| | ||| | ||| | | | | | || |||||
Sbjct 98 GCAGTTCATGCGTTCAAGTGTTTC-CAAGG--A--CGT--TCAAG--T-GGGTTACCAGA 147
Query 195 GGCCTGCCACATACCAGAGGCATGCAGCTTACGGAAACTACTCCAATGCTGCATTCCAAT 254
||||| | | || || || |||||| | |||||||||||||||||||||||||| ||||
Sbjct 148 GGCCTTCTATGTATCAAAGACATGCAACCTACGGAAACTACTCCAATGCTGCATTTCAAT 207
Query 255 ATCCTCTTGTGGCTG-CATCTC-GA-ATT-GCAACAACTACTTCTCCCGTGTTTGTCCAA 310
||||| | | |||| | || || ||||||||| ||||||||||||||||||||
Sbjct 208 TTCCTC------C-GACATCCCGGATGTTGGCAACAACTGCTTCTCCCGTGTTTGTCCAA 260
Query 311 ACTCCAGGAGAGAAAGGATTTACTAACTTTGCGATTGA-TTTCCTGATGGGTGGTGTTTC 369
|| ||||||||||| || || ||||||||||| |||| ||| |||||||||||||||||
Sbjct 261 ACCCCAGGAGAGAAGGGGTTCACTAACTTTGCCCTTGACTTT-CTGATGGGTGGTGTTTC 319
Query 370 TGCTGCTGTGTCAAAGACTGCTGCTGCTCCCATTGAGCGTGTCAAGCTTTTGATTCAAAA 429
|||||| || || ||||||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct 320 TGCTGCCGTCTCCAAGACTGCTGCTGCTCCTATTGAACGTGTTAAGCTTTTGATCCAGAA 379
Query 430 CCAGGATGAGATGCTTAAGGCTGGAAGACTCTCTGAGCCCTACAAGGGTATTGGTGACTG 489
||||||||||||| |||| ||||| || || ||||| |||||||||||||||||||||||
Sbjct 380 CCAGGATGAGATGATTAAAGCTGGCAGGCTTTCTGAACCCTACAAGGGTATTGGTGACTG 439
Query 490 TTTCGGCAGGACAATTAAGGATGAAGGGTTTGGTTCTCTGTGGAGAGGAAACACCGCTAA 549
|||||||||||| |||||||||||||| ||||||||||| |||||||||||||| || ||
Sbjct 440 TTTCGGCAGGACGATTAAGGATGAAGGTTTTGGTTCTCTATGGAGAGGAAACACTGCCAA 499
Query 550 TGTTATCCGTTACTTCCCCACTCAGGCCTTGAACTTTGCATTCAAAGATTACTTCAAGAG 609
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 500 TGTTATCCGTTATTTCCCCACTCAGGCCTTGAACTTTGCCTTCAAAGATTACTTCAAAAG 559
Query 610 GCTTTTCAACTTCAAGAAAGACAAG-GATGGCTACTGGAAGTGGTTTGCTGGTAACTTGG 668
||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||||||||
Sbjct 560 ACTTTTCAACTTTAAGAAGGAC-AGAGATGGTTACTGGAAGTGGTTTGCTGGTAACTTGG 618
Query 669 CATCTGGAGGTGCTGCTGGGGCCTCTTCCCTTCTCTTTGTGTACTCTCTTGACTATGCGC 728
|||||||||| || ||||| |||||||||||||| ||||||||||| ||||||||||| |
Sbjct 619 CATCTGGAGGAGCAGCTGGTGCCTCTTCCCTTCTGTTTGTGTACTCCCTTGACTATGCCC 678
Query 729 GTACCCGTCTTGCCAATGACT-CCAAGTCTGCCAAGAAGGGAGG-GGA--AAGGCAGTTC 784
|||||||||| || ||||| | ||||| |||| ||||| ||||| || ||| |||||
Sbjct 679 GTACCCGTCTAGCTAATGA-TGCCAAGGCTGCAAAGAAAGGAGGTGGTGGAAGACAGTTT 737
Query 785 AATGGTTTTGTTGATGTCTACAAGAA-GACCCTCAAGTCCGATGGTATTGCTGGACTTTA 843
||||| ||||||||||||||| ||| ||| || ||| | |||||||||||||| || ||
Sbjct 738 GATGGTCTTGTTGATGTCTACA-GAAAGACACTTAAGACTGATGGTATTGCTGGTCTGTA 796
Query 844 CCGTGGGTTCAACATCTCCTGTGCTGGTATCATTGTCTACCGTGGTCTTTACTTTGGACT 903
|||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||||
Sbjct 797 CCGTGGATTCAACATCTCATGTGTTGGTATCATTGTCTACCGTGGTCTGTACTTTGGACT 856
Query 904 GTACGACTCTGTGAAGCCTGTCCTCCTGACTGGTGACTTGCAGGACAGCTTCTTTGCTAG 963
|| ||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct 857 CTATGACTCTGTGAAGCCTGTTCTCCTCACTGGTGACTTACAGGACAGTTTCTTCGCTAG 916
Query 964 TTTTGCTCTTGGATGGCTCATCACTAATGGTGCGGGTCTTGCGTCCTACCCGATTGACAC 1023
||| |||||||||||| | || || ||||||||||||||||| |||||||| ||||||||
Sbjct 917 TTTCGCTCTTGGATGGGTTATTACCAATGGTGCGGGTCTTGCATCCTACCCCATTGACAC 976
Query 1024 GGTTCGTAGAAGAATGATGATGACATCAGGTGAAGCCGTGAAGTACAAAAGTTCGATGGA 1083
|| || ||||||||||||||||| || |||||||| || |||||||| ||||| ||||
Sbjct 977 TGTCCGCAGAAGAATGATGATGACGTCTGGTGAAGCTGTCAAGTACAAGAGTTCTTTGGA 1036
Query 1084 TGCGTTCTCA-CAGATCCTGAAGAAGGAAGGAGCCAGGTCTCTGTTCAAGGGTGCTGGTG 1142
|| ||| | |||||||| ||||| |||||||||| ||| || |||||||| |||||||
Sbjct 1037 CGCCTTCA-AGCAGATCCTCAAGAATGAAGGAGCCAAGTCACTCTTCAAGGGAGCTGGTG 1095
Query 1143 CCAACATCCTGCGTGCCGTTGCAGGTGCTGGTGTGCTTGCTGGCTACGACAAGCTGCAGT 1202
||||||| |||||||| ||||||||||||||||||||| | || |||||||| |||||
Sbjct 1096 CCAACATTCTGCGTGCTGTTGCAGGTGCTGGTGTGCTTTCCGGTTACGACAAATTGCAGC 1155
Query 1203 TAATCGTCTTCGGCAAGAAGTATGGATCTGGAGGTGCCTAAG 1244
| || |||||||| |||||||| ||||| |||||||||||||
Sbjct 1156 TGATTGTCTTCGGTAAGAAGTACGGATCAGGAGGTGCCTAAG 1197
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5