BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488171
Length=1494
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2078 0.0
> AT5G13500.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G25265.1);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants
- 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI
BLink). | chr5:4338155-4341003 FORWARD LENGTH=1583
Length=1583
Score = 2078 bits (1125), Expect = 0.0
Identities = 1423/1554 (92%), Gaps = 72/1554 (5%)
Strand=Plus/Plus
Query 1 TAATTCGTTAATGACGCACCGTTAGTCAACACCGCTTCCCTCATTTTATTACTCCTCCGA 60
|||||||||||||||||||||||||||||| |||||| | | | || |||||||||||||
Sbjct 34 TAATTCGTTAATGACGCACCGTTAGTCAACTCCGCTT-CGT-A-TTAATTACTCCTCCGA 90
Query 61 --tc--tcttattcttctccggcgacacttcttcccttgattcttctccctcttaggtct 116
|| ||||||||||||||||||||| ||||||||| ||||||||||||||| ||
Sbjct 91 TCTCTTTCTTATTCTTCTCCGGCGACA---CTTCCCTTG---CTTCTCCCTCTTAGGACT 144
Query 117 ctctctACGAATC--T---C-T--AATTCTTACGTCACACTCCGAGAATCCGCTTCTGAT 168
||||||||||||| | | | |||||||||| ||||||||||| || ||||||||||
Sbjct 145 CTCTCTACGAATCTGTAAGCTTCAAATTCTTACGCCACACTCCGAG-ATTCGCTTCTGAT 203
Query 169 TATTGAATGAATTTCTGAGCTCCAAGG----A-T-CC--------A--CTGCT-AAGCTT 211
||||| |||||||| |||||||||||| | | || | ||||| ||||||
Sbjct 204 TATTGTATGAATTTTTGAGCTCCAAGGATCCACTGCCATGTATTTATGCTGCTAAAGCTT 263
Query 212 GAAGGCAGTAGTGGAATCACCAATAAG---TTTGCTTTTGTAATTTAGCTTGATTTGAGG 268
|||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||
Sbjct 264 GAAGGCAGTAGTGGAATCACCATTAAGTTCTTTGC-TTTGTAATTTAGCTTGATTTGAGA 322
Query 269 ATAATC-AATGGGCAAAGCATCAGGCTTGCTTCTGTTTCTCTTGGGTTTTGGGTTCTTTG 327
|||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 ATAAACAAATGGGAAAAGCATCAGGCTTGCTTCTGTTTCTCTTGGGTTTTGGGTTCTTTG 382
Query 328 TTGTCACATATAATCTTCTAACACTTATAGTTCACAATAGATCTGGTGTGAGTAATTCAG 387
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 383 TTGTCACATATAATCTTCTGACACTTATAGTTCACAATAGATCTGGTGTGAGTAATTCAG 442
Query 388 ATGGAAGTCCACTTCTAGATCCTGTTGTTCAGATGCCTCTAAATATTAGGAAGGCTAAGA 447
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 443 ATGGAAGTCCACTTCTGGATCCTGTTGTTCAGATGCCTCTAAATATTAGGAAAGCCAAGA 502
Query 448 GTTCTCCAGCACCTTTTCATGTTGCCTTAACAGCTACAGATGCACCTTATAATAAGTGGC 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GTTCTCCAGCACCTTTTCATGTTGCCTTAACAGCTACAGATGCACCTTATAATAAGTGGC 562
Query 508 AGTGTCGTATTATGTATTATTGGTATAAGCAGAAGAAAGCTCTTCCTGGTTCTGATATGG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 AGTGTCGTATTATGTATTATTGGTATAAGCAGAAGAAAGCTCTTCCTGGTTCTGATATGG 622
Query 568 GTGGCTTCACTCGCATTTTGCATTCCGGTAATCCCGATAACTTGATGGATGAAATACCCA 627
|||||||||| || |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 623 GTGGCTTCACCCGTATTTTGCATTCCGGTAATTCTGATAACTTGATGGATGAAATACCCA 682
Query 628 CATTTGTGGTTGATCCTCTTCCCCCAGGTCTTGATCGGGGGTATGTTGTCTTGAATAGAC 687
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 683 CATTTGTGGTTGATCCTCTTCCTCCAGGTCTTGATCGGGGGTATGTTGTCTTGAATAGAC 742
Query 688 CATGGGCATTCGTGCAATGGCTTGAAAGAGCTACCATCAAGGAAGACTATGTGCTCATGG 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 CATGGGCATTCGTGCAATGGCTTGAAAGAGCTACCATCAAGGAAGACTATGTGCTCATGG 802
Query 748 CCGAGCCTGATCATGTATTTGTTAACCCCCTTCCCAATTTGGCTGTTGGAGGATTTCCAG 807
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 803 CAGAGCCTGATCATGTATTTGTTAATCCCCTTCCCAATTTGGCTGTTGGAGGATTCCCAG 862
Query 808 CCGCTTTTCCGTTTTTCTATATTACACCTGAAAAGTACGAAAACATAGTCAGAAAGTATT 867
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 863 CCGCTTTTCCGTTTTTCTATATTACTCCTGAAAAGTATGAAAACATAGTCAGAAAGTATT 922
Query 868 ATCCAGTGGAGATGGGGCCTGTAACAAATATCGATCCCATTGGCAACTCTCCTGTTATCA 927
|||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 923 ATCCAGCGGAGATGGGGCCAGTAACAAATATCGACCCCATTGGCAACTCTCCTGTTATCA 982
Query 928 TAAGAAAGGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACGATGA 987
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 983 TAAGCAAGGAATCACTTGAAAAGATTGCTCCTACATGGATGAATGTCTCGCTGACAATGA 1042
Query 988 AAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGTTGGAAATGTATGGTTACGCAA 1047
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1043 AAAACGATCCAGAAACTGATAAGGCATTTGGATGGGTGCTGGAAATGTACGGTTACGCAA 1102
Query 1048 TTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAGCCTC 1107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TTGCATCTGCTATACATGGGGTGCGTCACATACTTCGGAAGGATTTCATGCTTCAGCCTC 1162
Query 1108 CATGGGATTTGTCTACCAAGGGGAAGTTTATCATCCATTACACTTATGGATGCGATTACA 1167
| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1163 CGTGGGATTTGTCTACCAAGGGGAAGTTTATCATTCATTACACTTATGGATGCGACTACA 1222
Query 1168 ACATGAAGGGTGAGCTGACATATGGCAAAATTGGAGAGTGGCGTTTTGATAAGAGATCAC 1227
|||||||||| |||||||||||||||||||| ||||||||||| || |||||||||||||
Sbjct 1223 ACATGAAGGGGGAGCTGACATATGGCAAAATAGGAGAGTGGCGATTCGATAAGAGATCAC 1282
Query 1228 ATTTGCGGGGTCCTCCTCCGAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCGGAAAGTG 1287
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1283 ATTTGCGGGGTCCTCCTCCAAGGAACATGTCCTTGCCGCCTCCCGGTGTTCCCGAAAGTG 1342
Query 1288 TGGTGACTCTTGTGAAAATGGTGAATGAAGCAACTTCCAATATCCCTAATTGGGACACTC 1347
||||||| |||||||| |||||||||||||| ||| | | ||||||||||||||||||||
Sbjct 1343 TGGTGACACTTGTGAAGATGGTGAATGAAGCTACTGCGACTATCCCTAATTGGGACACTC 1402
Query 1348 CCTAACTCGCATCCACA-A-AA--CACGAACCATAGGGACAAAGCCATACAGCAA---T- 1399
||||||| |||||||| | || ||| ||||||||||||||| ||||||||||| |
Sbjct 1403 TCTAACTCACATCCACACACAAAACACAAACCATAGGGACAAATCCATACAGCAACAATA 1462
Query 1400 TTTT-C-T--TT-------C-T-C-CC-TTTACTTCC-TT-TTATCTGtttttt-tt-tC 1440
|||| | | || | | | || ||||||||| || || |||||||||| || |
Sbjct 1463 TTTTGCCTAATTTTTTTTTCCTTCTCCCTTTACTTCCCTTCTTGTCTGTTTTTTCTTGTA 1522
Query 1441 ACTGGTTAAATTATAAACTCGAGTAGTAAATTATGAAATTATTTGTTTGAGACG 1494
| |||||||||||| |||| ||||||||||||| ||||||||||||||| |||
Sbjct 1523 A-TGGTTAAATTATGAACTTGAGTAGTAAATTACAAAATTATTTGTTTGACACG 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73694400060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5