BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488176
Length=1628
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13570.2 | Symbols: DCP2 | decapping 2 | chr5:4367299-437026... 1234 0.0
> AT5G13570.2 | Symbols: DCP2 | decapping 2 | chr5:4367299-4370265
FORWARD LENGTH=1667
Length=1667
Score = 1234 bits (668), Expect = 0.0
Identities = 870/958 (91%), Gaps = 52/958 (5%)
Strand=Plus/Plus
Query 700 AGGTCTTAGAGGAAACTGGATTTGATGTCTCAAAGCTACTCAAGAAG-GAAGAATATATA 758
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 733 AGGTCTTAGAGGAAACTGGATTTGATGTCTCAAAGCTACTCAAG-AGAGAAGAATATATA 791
Query 759 GAGTTTGTTTTCAGGCAGCAAAGAGTACGACTATACATAGTTGCTGGGGTGAAAGAGGAT 818
|||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||| |||
Sbjct 792 GAGTTTGTTTTCAGGCAGCAAAGAGTACGACTTTACATTGTTGCTGGGGTGACAGAAGAT 851
Query 819 ACAGTTTTTGCACCACTCACAAAGAAGGAAATCAGTGAAATCGCATGGCATCGGCTTTAT 878
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct 852 ACAGTTTTTGCACCACTTACAAAGAAGGAAATCAGTGAAATCACATGGCATCGGCTTGAT 911
Query 879 CATCTTCAGCCAGCAAGTAATGAGGTGATAACTCATGGAGTTTCTGGTCTCAAATTGTAC 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CATCTTCAGCCAGCAAGTAATGAGGTGATAACTCATGGAGTTTCTGGTCTCAAATTGTAC 971
Query 939 ATGGTGGCACCATTTC-TTTCGTCGTTGAAGTCATGGATATTAAAGCATCCTTCACCTGT 997
||||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 972 ATGGTGGCACC-TTTCCTTTCGTCATTGAAGTCGTGGATATTAAAGCATCCTTCACCTGT 1030
Query 998 AGCACGGAGACATAACAAGCCCCTTAAAGCACTCTGCGTGTGGAATGCAAGGACTAGTCT 1057
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1031 AGCACGGAGACCTAACAAGCCCCTTAAAGCACTCTGCGTGTGGAATGCAAGGACTAGTGT 1090
Query 1058 TGGAGGGAACGGGACAGCAACAGTGGAAAGCCACAATAGAAAGCCTGAACTCAGGACAAC 1117
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1091 TGGAGGGAACGGGACAGCAACAGTGGAAAGCCAAAATAGAAAGTCTGAACTCAGGACAAC 1150
Query 1118 CACAATGGAAAGCAACAATAGAAAGCCTGAACTCA-GAACAACAACAATGGAAAGCCACA 1176
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1151 AACAATGGAAAGCAACAGTAGAAAGCCTGAACTCAAGAG-AACAACAATGGAAAGCCACA 1209
Query 1177 ATACAAAGCCTGAACCCAGGAAAACAACAATGGAAAGCCACAGTACAAAGCCTGAACTCG 1236
|||||||||||||| ||||||| ||||||||||||||||| ||||| | | |
Sbjct 1210 GTACAAAGCCTGAACTCAGGAAAGGAACAATGGAAAGCCACAATACAA--C---A----G 1260
Query 1237 GGACAGCAACAGTAGAAAGCCACAATACAAAGCCTGAAGTCGACCATCCTCAGGACATAG 1296
|| | ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1261 ---CA--A-CAGTAGAAAGCCACAATACAAAGCCTGTAGTCGACCATTCTCAGGACATAA 1314
Query 1297 AACCTGCAGACAGTTTCATAAACTTCAAGTTCGACAAGTCAGTTATCTTACGGGCG---- 1352
|||||| | |||||||||||||||||||||| || ||||||||||||||| ||||
Sbjct 1315 AACCTGGTGGCAGTTTCATAAACTTCAAGTTCAACCAGTCAGTTATCTTACAGGCGTTGG 1374
Query 1353 A-T--GG-AAT--AG---G--T---CA-T-----A--TATGGGTTGGATTGGTGTTGGGA 1390
| | || ||| || | | || | | ||| |||||||||||||||||||
Sbjct 1375 AATCTGGTAATTCAGCTTGACTGGTCAGTTTGTCACATATCGGTTGGATTGGTGTTGGGA 1434
Query 1391 GTTATGATGCGGTTGGATTGGTGGGTTTGTCTATAGCAAAACCGTTGGATATGTTCATAC 1450
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 GTAATGATGCGGTTGGATTGGTGGGTTTGTCTATAGCAAAACCGTTGGATATGTTCATAC 1494
Query 1451 ACGCTGGTACCTTTCTATTTCTTTGCCATTTGGTTTATATACCTCTCGTTTGTTCTAGAA 1510
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1495 ACGCTGGTAGCTTTCTATTTCTTTGCCATTTGGTTTATATACCTCTCGTTTCTTCTAGAA 1554
Query 1511 TGAAAGGGTTGTTGTACATGATGGTTGTTAGTAGGGAAGTGGTGAATCCTTTGGATCATG 1570
|||||||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 1555 TGAAAGGGTTGTTGTAAATGATG-TT---AGTAGGGAAGTGGTGAATCCTTTGGATCATG 1610
Query 1571 GCTTTAGATGACAATGGTTGCGACCAGCTATAAAGGTTAAAAGAGTTTCTTATCCGAG 1628
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GCTTTAGATGACAATG-TTACGACCAGCTATAAAGGTTAAAAGAGTTTCTTATCCGAG 1667
Score = 1098 bits (594), Expect = 0.0
Identities = 675/712 (95%), Gaps = 13/712 (2%)
Strand=Plus/Plus
Query 1 GCCCACCTTTTAGATACACACAATCGTCGCACTCCCAGATTCTTCTCCGGAGCGATCAGA 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 GCCCACCTTTTAGATACACACAATCGTCGCACTCTCAGATTCTTCTCCGGAGCGATCAGA 60
Query 61 TTTCACCGACGACGGTT-CCTTTGCCTCCTCTTTCAATCGGAGGAAGACTAAGCTTAGAG 119
||||||||||||||||| ||||||||||||||||||| ||||||| | ||||||||||
Sbjct 61 TTTCACCGACGACGGTTGTTTTTGCCTCCTCTTTCAATCAGAGGAAGCCAAAGCTTAGAG 120
Query 120 CAACAGTTATATATCTATCTATagagagggagagagagagatagagagCTCCTCTCATCC 179
|||||||| || |||||| ||||||||||||||||||||| |||||||||||||| |||
Sbjct 121 CAACAGTTGTAAATCTATATATAGAGAGGGAGAGAGAGAG--AGAGAGCTCCTCTCGTCC 178
Query 180 AGTATTAGGGTTTTAAAGGCAAGAAGAATTCACTACTAGAACAAGAGGAGG-A-ATaaaa 237
|||||||||||||||||||| ||| | |||||||||||||||| ||| | | ||||
Sbjct 179 AGTATTAGGGTTTTAAAGGC---AAG-A---ACTACTAGAACAAGAGAAGGTACAAAAAA 231
Query 238 aaaTGTCGGGTCTCCATCGATCATCAAGTTCATCGAAGAACATCGGAAATTGCCTCCCCT 297
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 232 AAATGTCGGGCCTCCATCGATCATCAAGTTCATCGAAGAACATCGGAAATTGCCTTCCCT 291
Query 298 CCAAAGAACTTCTTGATGATCTTTGCAGTCGATTTGTTTTGAATGTCCCTGAAGAAGATC 357
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 CCAAAGAACTCCTTGATGATCTTTGCAGTCGATTTGTTTTGAATGTCCCTGAAGAAGATC 351
Query 358 AACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 AACAGTCATTCGAGAGAATTTTGTTTCTGGTGGAGTATGCTTATTGGTACTATGAAGATA 411
Query 418 ATGCTGTAGAGAATGATCCCAAGCTTAAGTCCCTGTCCTTGAAAGAGTTTACTTCGCTCT 477
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 412 ATGCTGTAGAGAATGATCCAAAGCTTAAGTCCCTGTCTTTGAAAGAGTTTACTTCGCTCT 471
Query 478 TATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGACATATTTAAAG 537
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 472 TATTCAACAGCTGTGATGTGTTGAGACCTTATGTTACTCACATTGATGATATCTTTAAAG 531
Query 538 ACTTCACTTCTTACAAGTGTCGAGTTCCCGTCACTGGGGCAATCATCCTGGATGAGACAT 597
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 532 ACTTCACTTCTTACAAGTGTCGAGTTCCAGTCACTGGGGCAATTATCCTGGATGAGACAT 591
Query 598 ATGAAAGGTGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTTCCCCGCGGGA 657
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 592 ATGAAAGGTGCCTGTTGGTGAAGGGATGGAAAGGATCGAGCTGGAGCTTTCCCCGCGGAA 651
Query 658 AGAAGAGCAAGGATGAAGAAGACCATGCTTGTGCCATACGTGAGGTCT-TAG 708
| |||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 652 AAAAGAGCAAGGATGAAGAAGACCATGCTTGTGCCATACGTGAGCTCTCTAG 703
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80421273090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5