BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488180
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13610.1 | Symbols: | Protein of unknown function (DUF155) ... 2036 0.0
> AT5G13610.1 | Symbols: | Protein of unknown function (DUF155)
| chr5:4383013-4385029 FORWARD LENGTH=1490
Length=1490
Score = 2036 bits (1102), Expect = 0.0
Identities = 1376/1502 (92%), Gaps = 43/1502 (3%)
Strand=Plus/Plus
Query 1 GGCGGCTCTGTGGTTGATCTTCTTCTCCGGTGACTCTTA--CTCTGT-T-TAGAAGCAAA 56
||||||||||| ||||||||||||||||||||||||||| |||||| | | |||||||
Sbjct 1 GGCGGCTCTGTTGTTGATCTTCTTCTCCGGTGACTCTTACTCTCTGTGTAAAAAAGCAAA 60
Query 57 ATGATGCGTTCCGTTGACGTCTACGTAAAAACCCTAGGCTCTCCCGTCCGTTCAATTCTC 116
|||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||
Sbjct 61 ATGATGCGTTCCGTTGACGTCTACGTGAAAACTCTAGGCCCTCCCGTCCGTTCAATTCTC 120
Query 117 TACTCGATCTTTACCTCTAAGCATAAACCGCCGTCGCT---TTCGCTTCCATTGCACTTG 173
|||||||||||||||||| |||| ||||| ||||||| |||||||||||| |||||
Sbjct 121 TACTCGATCTTTACCTCTCAGCAAAAACCTTCGTCGCTGCCTTCGCTTCCATTTCACTTT 180
Query 174 TCGCTGCGTTCGTCGTCGAATACTCCCACTCGTTGTTTCTCCAATGTCCTAGCGATATCC 233
||| |||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||
Sbjct 181 TCGTTGCGTTCGTCGTCGAATATTCCCACTCGTTGTTTCTCCAATGTCGTTGCGAAATCC 240
Query 234 AATTCTCCGATTT---A----C--GGAATCCGAAATCTCTTCACTGCGACTACGAGGGCT 284
||||||||||||| | | ||| ||||||||||||||||| | | |||||||
Sbjct 241 AATTCTCCGATTTACGATTTTCAAGGATTCCGAAATCTCTTCACT--G---A-GAGGGCT 294
Query 285 ATCTCTTCGTCTACGACGACGCCCGTCGCTTCTGTTCAGCCGCAGCAGCAGCA-ACTTCA 343
|||||||||||||||||||| ||||||||||||| |||||||||||||| || | |||
Sbjct 295 ATCTCTTCGTCTACGACGACCCCCGTCGCTTCTGCTCAGCCGCAGCAGCTTCAGA-ATCA 353
Query 344 GAATCAGCATTCAGAGGAGGTTGATGATGAGGTTTCTAAGGGCTTGGAGGACGAAGCCAA 403
|||||||||| ||| ||||||||||| ||| |||||| |||||| ||||||||||||||
Sbjct 354 GAATCAGCATCCAGCTGAGGTTGATGAAGAGATTTCTATGGGCTTAGAGGACGAAGCCAA 413
Query 404 GCTTTCTATTCCTGTGCGAGCTTATTTCTTCTCCACTAGCGTTGATTTGAGAAGCTTAAT 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GCTTTCTATTCCTGTGCGAGCTTATTTCTTCTCCACTAGCGTTGATTTGAGAAGCTTAAT 473
Query 464 TGAGCAGAACAAGCAGAACTTCATCCCACCTACTTCGCGTATGACTAACTATGTTGTTCT 523
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 AGAGCAGAACAAGCAGAACTTCATCCCACCTACTTCGCGTATGACTAACTATGTTGTTCT 533
Query 524 TAAGTTCGGCAATCATTCTGATCCCACTGGTACTACTC-ATGGACGCATAAGTGGGAGTG 582
|||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||
Sbjct 534 TAAGTTTGGCAATCATTCTGATCCCACTGATACTACTCGA-GGACGCATAAGTGGGAGTG 592
Query 583 AGTGTATTTACATGGTAGTATTTCATTATGGATCGATTGTCTTGTTTAATGTAAGGGAAC 642
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGTCTATTTACATGGTAGTATTTCATTATGGATCGATTGTCTTGTTTAATGTAAGGGAAC 652
Query 643 ATGAGGTTGATGAATATCTTAAAGTAGTGGAGAGGCATGCCTCTGGTTTGCTTCCAGAAA 702
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 653 ATGAGGTTGATGAATATCTTAAAGTAGTGGAGAGGCATGCCTCTGGGTTGCTTCCAGAAA 712
Query 703 TGAGAAAAGATGAATATGAAGTAAGAGAGGATCCAAATCTGGACACCTGGATGAAGGGAG 762
||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||
Sbjct 713 TGAGAAAAGATGAATATGAAGTAAGAGAGAATCCAAATCTGGACACATGGATGGAGGTAG 772
Query 763 GACGGGATTTTATCAGGTTGCAGTTCTTGTATATTGATGGGATCAGAACCATTGGCA-GT 821
||||||||||||||||||||||||||||| ||| |||||||||||||||||| || | ||
Sbjct 773 GACGGGATTTTATCAGGTTGCAGTTCTTGAATACTGATGGGATCAGAACCATAGG-ATGT 831
Query 822 GTTCTGGGCCAGAGCATTGCTCTGGATTACTATGGCCGCCAGGTTGATGGTATTGTAGCA 881
|||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 832 GTTCTGGGCCAGAGTATTGCTCTGGATTACTATGGCCGGCAGGTTGATGGTATGGTAGCA 891
Query 882 GAATTTACTGACATTAACCGTCAGTTGGAGATAACTGGAACGTTTACAATGAAAACGAAA 941
||||||||||| || |||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 892 GAATTTACTGAGATAAACCGTCAGTTGGAGATAACAGGAACGTTTACAATGAAAAGGAAA 951
Query 942 AAGCTGTTCCAGTTGGTTGGAAAGGCTAATTCTAAT-CAGGCTGATGTGATTCTGAAGCT 1000
|||||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct 952 AAGCTGTTCCAGTTGGTTGGAAAGGCTAATG-TGATTCTGGCTGATGTGATTCTGAAGCT 1010
Query 1001 TGGTCTTTTTGAGAGGTCAGATATAGCCTGGAAGGATGCCAAATATGGTCAGATATGGGA 1060
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1011 TGGTCTTTTTGAGAGGTCAGATATAGCTTGGAAGGATGCGAAATATGGTCAGATATGGGA 1070
Query 1061 ATTTCTTAGAGATGAATTTGAACTGACTGAGAGTTTTGCAAACCTTGATTATAAGCTCAA 1120
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1071 GTTTCTGAGAGATGAATTTGAACTGACACAGAGTTTTGCAAACCTTGATTATAAGCTCAA 1130
Query 1121 GTTTGTAGAGCACAACGTTCGTTTCCTTCAAGAAATACTTCAGAACAGGAAATCAGCTTC 1180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1131 GTTTGTAGAGCACAACGTTCGTTTCCTTCAAGAAATACTTCAGAACAGGAAATCAGCTAC 1190
Query 1181 TCTGGAGTGGCTAATCATTATCCTGATTAGTGTTGAGATCGCGATTTCTTTGTATAATAT 1240
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct 1191 TCTGGAGTGGCTAATCATTATCCTGATTAGTATGGAGATCGCGATTTCTTTCTATAATAT 1250
Query 1241 GTC-CACGACATCCTTGTGATCGA--TCACTC-TCTACCATTTCTAAAGCATATTCATAT 1296
||| | | ||||||||||||||| ||| || ||| |||||||||||||||||||||||
Sbjct 1251 GTCTCGGG-CATCCTTGTGATCGAGATCA-TCCTCTGCCATTTCTAAAGCATATTCATAT 1308
Query 1297 TCTTTATTATGGTTACCACTTTTCTTCACAGTGTAAAGTGATAACAA-AGCTCATAAA-- 1353
|||||||||||||||||||||||||||||| || ||||||||||| | | | |||
Sbjct 1309 TCTTTATTATGGTTACCACTTTTCTTCACAATGCAAAGTGATAACTTTA--TAACAAAGC 1366
Query 1354 TAATAACTTTAGGAATGAGTTTGGGAGTTAGGACTAAGTTTGTTACAGACTCCCTTTGCA 1413
| |||| | || ||||||||| ||||||||||||| |||||||||||| || |||||||
Sbjct 1367 TCATAAATA-AG-AATGAGTTTAGGAGTTAGGACTACGTTTGTTACAGATTCTCTTTGCA 1424
Query 1414 TTTAAGCGCCTGCGTCTTTTCAGTCCAACAAGACTTGTTTATGCATAGAAAATCAttttt 1473
|||||| |||||| ||||||||||||||||||||||| ||||||||| |||||||||| |
Sbjct 1425 TTTAAGAGCCTGCTTCTTTTCAGTCCAACAAGACTTGGTTATGCATATAAAATCATTTAT 1484
Query 1474 tt 1475
||
Sbjct 1485 TT 1486
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5