BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488181 Length=924 Score E Sequences producing significant alignments: (Bits) Value AT5G13620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1330 0.0 > AT5G13620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G49290.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:4385385-4386373 REVERSE LENGTH=906 Length=906 Score = 1330 bits (720), Expect = 0.0 Identities = 850/911 (93%), Gaps = 15/911 (2%) Strand=Plus/Plus Query 20 CTTCATCTTCATCTGCAGTATCGGTGACGAGAGACGAGTTCAATGCCTTCCACAAGTGTG 79 |||||||||||||||||||| | |||||| |||||||||||||||| ||||||||||||| Sbjct 5 CTTCATCTTCATCTGCAGTAGCCGTGACGCGAGACGAGTTCAATGCTTTCCACAAGTGTG 64 Query 80 ACAGAGACCTTTTCAGCCGTTTTGTCGGGCGTCTAAGGCGAGACATTAGCCAGTCTCTTC 139 |||||| ||||||| |||||||||||| ||| |||||||||||||||| |||||||| | Sbjct 65 ACAGAGCCCTTTTCCGCCGTTTTGTCGTGCGACTAAGGCGAGACATTAATCAGTCTCTCC 124 Query 140 AGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTCGTAAGCAACCTAATCGTCA 199 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 125 AGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTTGTAAGCAACCTAATCGTCA 184 Query 200 ACTTTAATTCTTTACCCGATTTCTTCATCAACGCAGTGGCTGACGAAGTCGTGATGTGTC 259 |||||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||| Sbjct 185 ACTTTAATTCTTTACCTGATTTCTTCATCAACACAGTGGCTGACGAAGTTGTTATGTGTC 244 Query 260 TGAGTTGTTTGTCCTACGAAAATTTCTCAATGTTTGTTGCCAACTTTGGGCAAAAAACCA 319 |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || Sbjct 245 TGAGTTGTTTGTCCTACGAAAATTTCTCTATGTTTGTTGCCAACTTTGGGAAAAAAATCA 304 Query 320 TACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTAATCCACCAGAACC 379 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 305 TACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTCATCCACCAGAACC 364 Query 380 GCGAAAGCATTCTTCTT-TCGATGAAGGAGCATTTAAACAGTATATGTTACCCAGCTTTT 438 | ||||||||||||||| | |||||| ||||||||| |||||||||||||||||||||| Sbjct 365 GTGAAAGCATTCTTCTTGAC-ATGAAGAAGCATTTAACCAGTATATGTTACCCAGCTTTT 423 Query 439 GAGGATATATGCGTGCAAGCTGAGGAGAAAAAGGTGATGGAGGATATGAAGCAGTTGGGG 498 |||||||||||||||||||||||| || |||||||||| |||||||||||||| |||||| Sbjct 424 GAGGATATATGCGTGCAAGCTGAGAAGGAAAAGGTGATAGAGGATATGAAGCACTTGGGG 483 Query 499 TTTAGCAAGGACAAGGTTGTTCATAAAGCTGAATCAAGTAGCCAGTTCTTAAGTGGACAA 558 |||||||||| | |||||||||||||| ||||||||||||||||||||||| |||| Sbjct 484 TTTAGCAAGG-C-----TGTTCATAAAGCTGGATCAAGTAGCCAGTTCTTAAGTGAACAA 537 Query 559 CAAGTAACAACAAGAACAAGCAAGATTGGTGCATTTTCTGAGGATGAGCAGGCAAGGGAA 618 |||| ||||||||||||||||||| |||||| ||| |||||||||||||| ||||||||| Sbjct 538 CAAGCAACAACAAGAACAAGCAAGGTTGGTGTATTCTCTGAGGATGAGCAAGCAAGGGAA 597 Query 619 GACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGATTTCCGAAGCAGAAGTG 678 |||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| Sbjct 598 GACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGCTTTCTGAAGCTGAAGTG 657 Query 679 CATGCCTACTTCACCAGGAGATTTGGGGAGATTATAGAAGCGATAATCATGCCTGGAGGA 738 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 658 CATGCCTACTTCACCAGGAGATTTGGAGAGATTATAGAAGCGATAATCATGCCTGGAGGG 717 Query 739 GAAGGGAGTGAGCAGGCGCTGTATGCAAAGATGGTGTTACGTTCTGCAGCCATGATACCG 798 ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 718 GAAGGGAATGAGCAGGCGCTGTATGCAAAGATGGTGTTACATTCTGCAGCCATGATACCG 777 Query 799 GAGATTGTAAGTGATGGGATC-ACAAGAAACAAATACACCATTAATGGAAAACATGTTTG 857 ||||||||||||||||||||| | ||| ||||| |||||||||||||||||||||||||| Sbjct 778 GAGATTGTAAGTGATGGGATCGA-AAGGAACAAGTACACCATTAATGGAAAACATGTTTG 836 Query 858 GGCTCGAAAATACATTCCCAGATCCTCCATTAATAAT---CTTGCCCCATCCAATGGAGT 914 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 837 GGCTCGAAAATACATTCCCAGATCCTCCATTAATAATAATCTTGCCCCATCCTATGGAGT 896 Query 915 CT-CTATCTAG 924 | || ||||| Sbjct 897 -TGCTCTCTAG 906 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45160498153 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5