BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488181
Length=924
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13620.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1330 0.0
> AT5G13620.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G49290.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:4385385-4386373 REVERSE LENGTH=906
Length=906
Score = 1330 bits (720), Expect = 0.0
Identities = 850/911 (93%), Gaps = 15/911 (2%)
Strand=Plus/Plus
Query 20 CTTCATCTTCATCTGCAGTATCGGTGACGAGAGACGAGTTCAATGCCTTCCACAAGTGTG 79
|||||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||
Sbjct 5 CTTCATCTTCATCTGCAGTAGCCGTGACGCGAGACGAGTTCAATGCTTTCCACAAGTGTG 64
Query 80 ACAGAGACCTTTTCAGCCGTTTTGTCGGGCGTCTAAGGCGAGACATTAGCCAGTCTCTTC 139
|||||| ||||||| |||||||||||| ||| |||||||||||||||| |||||||| |
Sbjct 65 ACAGAGCCCTTTTCCGCCGTTTTGTCGTGCGACTAAGGCGAGACATTAATCAGTCTCTCC 124
Query 140 AGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTCGTAAGCAACCTAATCGTCA 199
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 125 AGGTCATGAGCTTTCTCCTCTATCTCGAGAAAAGTGGTCTTGTAAGCAACCTAATCGTCA 184
Query 200 ACTTTAATTCTTTACCCGATTTCTTCATCAACGCAGTGGCTGACGAAGTCGTGATGTGTC 259
|||||||||||||||| ||||||||||||||| |||||||||||||||| || |||||||
Sbjct 185 ACTTTAATTCTTTACCTGATTTCTTCATCAACACAGTGGCTGACGAAGTTGTTATGTGTC 244
Query 260 TGAGTTGTTTGTCCTACGAAAATTTCTCAATGTTTGTTGCCAACTTTGGGCAAAAAACCA 319
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||
Sbjct 245 TGAGTTGTTTGTCCTACGAAAATTTCTCTATGTTTGTTGCCAACTTTGGGAAAAAAATCA 304
Query 320 TACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTAATCCACCAGAACC 379
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 305 TACCTTTGATCACGCGGATGACTGGAGAGTACCTTACTCTCGCAGTCATCCACCAGAACC 364
Query 380 GCGAAAGCATTCTTCTT-TCGATGAAGGAGCATTTAAACAGTATATGTTACCCAGCTTTT 438
| ||||||||||||||| | |||||| ||||||||| ||||||||||||||||||||||
Sbjct 365 GTGAAAGCATTCTTCTTGAC-ATGAAGAAGCATTTAACCAGTATATGTTACCCAGCTTTT 423
Query 439 GAGGATATATGCGTGCAAGCTGAGGAGAAAAAGGTGATGGAGGATATGAAGCAGTTGGGG 498
|||||||||||||||||||||||| || |||||||||| |||||||||||||| ||||||
Sbjct 424 GAGGATATATGCGTGCAAGCTGAGAAGGAAAAGGTGATAGAGGATATGAAGCACTTGGGG 483
Query 499 TTTAGCAAGGACAAGGTTGTTCATAAAGCTGAATCAAGTAGCCAGTTCTTAAGTGGACAA 558
|||||||||| | |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 484 TTTAGCAAGG-C-----TGTTCATAAAGCTGGATCAAGTAGCCAGTTCTTAAGTGAACAA 537
Query 559 CAAGTAACAACAAGAACAAGCAAGATTGGTGCATTTTCTGAGGATGAGCAGGCAAGGGAA 618
|||| ||||||||||||||||||| |||||| ||| |||||||||||||| |||||||||
Sbjct 538 CAAGCAACAACAAGAACAAGCAAGGTTGGTGTATTCTCTGAGGATGAGCAAGCAAGGGAA 597
Query 619 GACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGATTTCCGAAGCAGAAGTG 678
|||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||
Sbjct 598 GACGACAGGACTGTCTTCCTCACATTTTCTAGAGGATACCCGCTTTCTGAAGCTGAAGTG 657
Query 679 CATGCCTACTTCACCAGGAGATTTGGGGAGATTATAGAAGCGATAATCATGCCTGGAGGA 738
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 658 CATGCCTACTTCACCAGGAGATTTGGAGAGATTATAGAAGCGATAATCATGCCTGGAGGG 717
Query 739 GAAGGGAGTGAGCAGGCGCTGTATGCAAAGATGGTGTTACGTTCTGCAGCCATGATACCG 798
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 718 GAAGGGAATGAGCAGGCGCTGTATGCAAAGATGGTGTTACATTCTGCAGCCATGATACCG 777
Query 799 GAGATTGTAAGTGATGGGATC-ACAAGAAACAAATACACCATTAATGGAAAACATGTTTG 857
||||||||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||
Sbjct 778 GAGATTGTAAGTGATGGGATCGA-AAGGAACAAGTACACCATTAATGGAAAACATGTTTG 836
Query 858 GGCTCGAAAATACATTCCCAGATCCTCCATTAATAAT---CTTGCCCCATCCAATGGAGT 914
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 837 GGCTCGAAAATACATTCCCAGATCCTCCATTAATAATAATCTTGCCCCATCCTATGGAGT 896
Query 915 CT-CTATCTAG 924
| || |||||
Sbjct 897 -TGCTCTCTAG 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45160498153
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5