BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488185
Length=1876
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2244 0.0
AT5G13670.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 147 5e-34
> AT5G13660.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G59830.2);
Has 30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422;
Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source:
NCBI BLink). | chr5:4404604-4407166 FORWARD LENGTH=2141
Length=2141
Score = 2244 bits (1215), Expect = 0.0
Identities = 1683/1896 (89%), Gaps = 83/1896 (4%)
Strand=Plus/Plus
Query 46 TGACGGCGCGTTCGAGCTACTGAAGAAGCTAATATTAACTATTAAGAACAGCTCTGCGAT 105
||||| ||||||||||||||||||| |||||| || |||| ||||||||| | |||||||
Sbjct 259 TGACGCCGCGTTCGAGCTACTGAAGTAGCTAACATCAACTTTTAAGAACATCGCTGCGAT 318
Query 106 CT-ACTCCCAGGGATGCAATTCCAAGAGGATGATAGCAGATTTTAGTAGAAAGGATTTTG 164
|| |||||||||||||||| ||||||| ||||| | |||| |||| ||||||||| |
Sbjct 319 CTCACTCCCAGGGATGCAAATCCAAGATGATGAGAAAAGATATTAGCAGAAAGGATATAA 378
Query 165 TTGAGAAGATTCCATATTCTGGTTCTTCAACAATGGAATTAAAGCGGAGTTATCATCAGT 224
||||| |||||||||||||||||||||| | ||||||||||||||||||| |||||||||
Sbjct 379 TTGAGGAGATTCCATATTCTGGTTCTTCGAGAATGGAATTAAAGCGGAGTCATCATCAGT 438
Query 225 GGTTGACAGAACCGTCTAGCTCACAAGTATTCAAG-AATAAGAG---ACAA---GT-G-G 275
||||||||||| |||||||||| || ||||| || |||||||| |||| || | |
Sbjct 439 GGTTGACAGAAGAGTCTAGCTCAGAACTATTC-AGTAATAAGAGACAACAAGTGGTAGAG 497
Query 276 -TCGATGCTCATATGAATTTATCTTCATTGGACACTTCTCTTGTGCCCACAACACACTTC 334
| ||||||||||||||||||||| ||| |||||||||||||||| || | ||||||||
Sbjct 498 ATTGATGCTCATATGAATTTATCTCCATGGGACACTTCTCTTGTG-CC-C-TCACACTTC 554
Query 335 ACTGATTGCTTATTC---GACCCTGCCAATGCGCATTCATCACATCTCCTCCG---TGCT 388
||||||||||||||| || ||||||| ||||||| |||||||||| ||||| || |
Sbjct 555 ACTGATTGCTTATTCGATGATCCTGCCATTGCGCATACATCACATCTTCTCCGTAATGGT 614
Query 389 CGAAATTATAC--A-GAG-GA-GCAAT-C----T-A----TTGGTTTGCCAGTGG-T--T 430
||||||||||| | ||| | ||||| | | | ||||||||||| ||| | |
Sbjct 615 CGAAATTATACTGAGGAGCAATGCAATCCTGTTTCATCTTTTGGTTTGCCACTGGCTCAT 674
Query 431 CATGGGAGCTCTTTTAATCTTGACACCATTAGA-AAAGTTAGCAACTTGCCCGACTTCAT 489
|| |||||||||||||||||||||||||||| | |||||||||||| ||||||| |||||
Sbjct 675 CACGGGAGCTCTTTTAATCTTGACACCATTA-ATAAAGTTAGCAACGTGCCCGAGTTCAT 733
Query 490 GGTTCAGCTTTATAATGAGGGATTTTCAACATCATTTGAAAC-GCTTCCTTCTTATAATA 548
||||||||||||| | ||||| ||||||||||||||||||| || |||||||| |||||
Sbjct 734 GGTTCAGCTTTATGGTCAGGGAATTTCAACATCATTTGAAACGGC-TCCTTCTTTTAATA 792
Query 549 GTGGTCAAGAGAG--C-ACGCTATCCTTTGGCCAAACCTGCACTAGTAGTATTGACAAGA 605
||||||||||||| | |||||||||||||||||||||| | |||| || ||||| ||
Sbjct 793 GTGGTCAAGAGAGTACTACGCTATCCTTTGGCCAAACCT--TC-AGTAATACTGACAGGA 849
Query 606 GCTTCATCTTCCCAGGACCA-TTCGCTAGCAAGGCAGATGGAAATTTCATTCAAAACTTT 664
|||||||||| ||||| || ||||||||||| |||||||||||||||||| ||||||
Sbjct 850 GCTTCATCTTGCCAGG-GCAGTTCGCTAGCAAAACAGATGGAAATTTCATTCGAAACTTC 908
Query 665 AGTAATGAAGGTATTGGTCTCGTACCAACCGGTGA-TATTTTTGACAAAGGAGATGGAAA 723
| |||||||||| ||||| ||||||| | ||||| || || |||||||||||||| |||
Sbjct 909 AATAATGAAGGTGTTGGTGTCGTACCGATTGGTGATTA-TTATGACAAAGGAGATGAAAA 967
Query 724 TGTCTTGTCAACATTTCATCCATTTCAGAAAGGAGTAGAAAACTTTGTTTTGATGGGTCA 783
|||| |||||||||||||||| || |||||||||||||||||||| | | |||||||||
Sbjct 968 TGTCCTGTCAACATTTCATCCGTTGGAGAAAGGAGTAGAAAACTTTCTATCGATGGGTCA 1027
Query 784 GTCTCTTCAAAAGGCTGATTGCAATATCTTCTCAGTGAGTTCCTCCTATAACAAGGGACA 843
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1028 GTCTCTTCAAAAGGCTGATTGTAATATCTTCTCAGTGAGTTCCTCCTATAATAAGGGACA 1087
Query 844 AGAGAACTTTATGCCTCTTCTATCTTGTG-ACAAATTGCCTGGAA-ACGTTTTCATGACC 901
|||||||||||||||||||| ||||||| || || | ||| ||| ||| ||||||||||
Sbjct 1088 GGAGAACTTTATGCCTCTTCTCTCTTGTGAAC-AAGTACCT-GAATACGATTTCATGACC 1145
Query 902 GGATC-AAATAATTACAAAGAAAATGTCAATGCCTTGTCAAG-GGGAGAGT-CTCCATTT 958
| ||| || | || |||| ||||||| |||||| ||||| || |||| ||| || |||||
Sbjct 1146 GAATCTAACT-ATCACAATGAAAATGCCAATGCGTTGTC-AGCGGGACAGTCCT-CATTT 1202
Query 959 ACGGAAGGCGGTGAGATGGCATTTATGGTTTCTAGCC---A-AGAG-A-G---AA-C-A- 1006
|||||||||||||||||| |||||||||||||||||| | |||| | | || | |
Sbjct 1203 ACGGAAGGCGGTGAGATGACATTTATGGTTTCTAGCCAAGAGAGAGCAGGTCAAAGCAAT 1262
Query 1007 GATCAAATTAGGCACGA-G--GATAGAAGCCAGACCCTATCTTTTGGAGATTATCAGAAA 1063
|||||||| |||| ||| | ||||||||| ||||||||||||||||||||| |||||||
Sbjct 1263 GATCAAATCAGGCGCGAGGATGATAGAAGCGAGACCCTATCTTTTGGAGATTGTCAGAAA 1322
Query 1064 GAATCCACGATGGGATCAGCAGTCCGTGTTA-TCAACGGTTATGAGAACTTCAGCCATGA 1122
||| || | ||||||||| |||||||||||| | ||| |||||||||||||||||||||
Sbjct 1323 GAAACCGCAATGGGATCATCAGTCCGTGTTAGT-AACAATTATGAGAACTTCAGCCATGA 1381
Query 1123 CCCTGCAATTGCTAAAGATCCTCCTCATATGGAAGCAGAGGAAAATATGTCTTTTGAATT 1182
|||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1382 CCCTGCAATTACTAAAGATCCTCTTCATATCGAAGCAGAGGAAAATATGTCTTTTGAATG 1441
Query 1183 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAAGTAAAGA 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1442 TAGAAATCCCCCTTATGCTAGTCCTAGAGTTGATACCTTGCTGGTGCCCAAAATTAAAGA 1501
Query 1243 TACCAAGACAGCTAAGAAGGGTTCTACAAATACATTTCCTTCAAATGTTAAGTCATTGCT 1302
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
Sbjct 1502 TACAAAGACAGCTAAGAAGGGTTCTACAAACACATTTCCTTCAAATGTTAAGTCCTTGTT 1561
Query 1303 GTCAACAGGAATGTTTGATGGGGTTACTGTGAAGTACTATTCGTGGTCACGTGAGGTCAG 1362
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 1562 GTCAACAGGAATCTTTGATGGAGTTACTGTGAAGTACTATTCGTGGTCACGTGAGCAGAG 1621
Query 1363 AAATCTCAAAGGAATCATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGT-AACT 1421
|||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1622 AAATCTCAAAGGGATGATAAAGGGGACTGGGTATCTATGTGGTTGCGGCAACTGTAAAC- 1680
Query 1422 TTAATAGAGTTCTTAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCATC 1481
|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1681 TTAATAAAGTTCTCAATGCGTATGAATTCGAGCAGCATGCTAATTGCAAGACAAAGCACC 1740
Query 1482 CAAATAACCACATATACTTTGAGAATGGAAAGACCATTTATGGCGTTGTTCAAGAGCTGA 1541
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1741 CAAATAACCACATATACTTTGAAAATGGAAAGACCATTTATGGCGTTGTTCAAGAACTGA 1800
Query 1542 AGAATACACCTCAGGAAAAGTTGTTCGATGCTATTCAAAATGTAACAGGATCTTATATCA 1601
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||| | ||||
Sbjct 1801 AGAATACACCTCAGGAGAAGTTGTTTGATGCTATTCAAAATGTTACAGGATCTGACATCA 1860
Query 1602 ACCATAAGAATTTCAACACCTGGAAAGCTTCATATCATGTTGCCAGCCTTGAACTTCAGC 1661
||||||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 1861 ACCATAAGAATTTCAACACATGGAAAGCTTCATATCACGTTGCTAGACTTGAACTTCAGC 1920
Query 1662 GTATCTATGGGAAGGATGATGTCACTTTGGCCTCTTGAGAAGACGAGTTATCAACTGGCA 1721
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1921 GTATCTATGGGAAGGATGATGTCACTTTGGCATCTTGAGAAGACGAGTTATCAACTGGCA 1980
Query 1722 GGCTTTTTGTCGTAAGTGATGTCTGGG-GAAGTCTAGTTCTCTTACTAAAGTATATAAAC 1780
||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |
Sbjct 1981 GGCTTTTTGTCGTAAGTGAAGTCTGGGTGAAGTCTAGGTCTCTTACTAAAGTATATAATC 2040
Query 1781 TACTGCAAGAACTCCAAATTCTTAGCTTTTATGAGACTTTATGTAGCGCATTGCTTGCTC 1840
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2041 TACTGCAAGAACTCCAAGTTCTTAGCTTTTATGAGACTTAATGTAGCGCATTGCTTGCTC 2100
Query 1841 TTATTCTGGCAAACCAATACTATCAAAAATGTTTTT 1876
||||||||||||||||||||||||||||||||||||
Sbjct 2101 TTATTCTGGCAAACCAATACTATCAAAAATGTTTTT 2136
> AT5G13670.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:4407077-4409011 REVERSE LENGTH=1318
Length=1318
Score = 147 bits (79), Expect = 5e-34
Identities = 83/85 (98%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 1792 CTCCAAATTCTTAGCTTTTATGAGACTTTATGTAGCGCATTGCTTGCTCTTATTCTGGCA 1851
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1318 CTCCAAGTTCTTAGCTTTTATGAGACTTAATGTAGCGCATTGCTTGCTCTTATTCTGGCA 1259
Query 1852 AACCAATACTATCAAAAATGTTTTT 1876
|||||||||||||||||||||||||
Sbjct 1258 AACCAATACTATCAAAAATGTTTTT 1234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92871008250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5