BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488195
Length=1873
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13740.1 | Symbols: ZIF1 | zinc induced facilitator 1 | chr5... 2531 0.0
> AT5G13740.1 | Symbols: ZIF1 | zinc induced facilitator 1 | chr5:4432306-4436668
FORWARD LENGTH=1912
Length=1912
Score = 2531 bits (1370), Expect = 0.0
Identities = 1628/1749 (93%), Gaps = 31/1749 (2%)
Strand=Plus/Plus
Query 115 TCCAATTTGTACATATATACGTGACTCATCGTCTTTTTCAGTCCCACACGTTCTGCTCCA 174
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 147 TCC-ATTTGTACATATATACGTGACTCATCGTCTTTTTCACTCCCACACGTTCTGCTCCA 205
Query 175 GCGAT--TGAGAGAGAATCTCTGTGTGGTACT-CTTTCATT--TCT-CCTTTCCG-ATTT 227
||||| || ||||||||||||||||||| || ||| || || || | |||
Sbjct 206 GCGATACTGTGAGAGAATCTCTGTGTGGTTCTGAATTC-TTAGGCTGGAATT--GAATTC 262
Query 228 TGTAAAATGGCGGAGGAGTACAAGGAGGCGTTGTTGGAGAAGCAGCAGTATCACGACGGA 287
|| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 263 TG--AAATGGCGGAGGAGTACAAGGAAGCGTTGTTGGAGAAGCAGAACTATCACGACGGA 320
Query 288 TGTCCGGGATGCAAGGTGGAGCAGATGAAGCAGCTCCGGCGAGGATACCCTTACCTCGAG 347
||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 321 TGTCCCGGCTGTAAGGTGGAGCAGATGAAGCAGCTCCGGCGAGGATATCCTTACCTCGAG 380
Query 348 CTTACCTTCGTTTGGATCATCGTCCTCTCCACTTCTCTGCCAATTTCCTCACTCTATCCC 407
||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 381 CTTTCCTTCGTTTGGATTATCGTCCTCTCCACTTCTCTACCAATTTCCTCACTCTATCCC 440
Query 408 TTCCTCTACTATATGATTGAGGATTTCGGTGTTGCAAAGACGGAGAAAGATATTGGGTTT 467
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 441 TTCCTCTACTATATGATTGAGGATTTTGGTGTCGCAAAGACGGAGAAAGATATTGGGTTT 500
Query 468 TACGCTGGATTTGTGGGTTGCTCATTTATGCTTGGAAGAGCATTGACGTCTGTGTTCTGG 527
|| ||||| ||||| |||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 501 TATGCTGGTTTTGTTGGTTGCTCTTTTATGCTTGGAAGAGCACTGACTTCTGTGTTCTGG 560
Query 528 GGAATTGTGGCTGATCGTTATGGAAGAAAACCCATTATACTCTTGGGAACTATCTCAATT 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 GGAATTGTGGCTGATCGTTATGGAAGAAAACCCATTATACTCTTGGGAACTATCTCAATT 620
Query 588 GCGATTTTCAACGCTCTTTTTGGCTTGAGCGT-AAACTTTTGGATGGCAATTGGCACGAG 646
|| ||||||||||||||||||||||||||| | ||| |||||||||||||||||||| ||
Sbjct 621 GCAATTTTCAACGCTCTTTTTGGCTTGAGC-TCAAATTTTTGGATGGCAATTGGCACAAG 679
Query 647 GTTTCTTCTTGGGAGTTTCAACTGTTTGCTTGGAACCATGAAGGCATATGCATCGGAAAT 706
|||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 680 GTTTCTTCTTGGGAGTTTCAACTGTTTGCTTGGAACAATGAAGGCCTATGCATCAGAAAT 739
Query 707 ATTTCGTGATGAATATCAAGCAACAGCAATGTCAGCTGTTAGTACTGCTTGGGGCATTGG 766
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 740 ATTTCGTGATGAATATCAAGCTACCGCAATGTCAGCTGTTAGTACTGCTTGGGGCATTGG 799
Query 767 ACTGGTCATTGGCCCTGCTCTAGGGGGATTTTTAGCTCAGCCGGCAGACAAATATCCAAA 826
|||| |||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 800 ACTGATCATTGGCCCTGCTCTTGGTGGTTTTTTAGCTCAGCCGGCAGACAAATATCCAAA 859
Query 827 TGTGTTCTCCCAAGAATC-CATTTTTGGCAGATTCCGGTATGCATTGCCTTGCTTTACGA 885
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 860 TGTGTTCTCCCAAGAATCTC-TTTTTGGCAGATTCCGGTATGCATTGCCTTGCTTTACGA 918
Query 886 TATCAGCTTTTGCCTTGGTTGTGACAGTACTATGCTGCTTCATTCCGGAGACACTGCACA 945
| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 919 TTTCAGCTTTTGCCTTGCTTGTGACAGTACTATGCTGCTTCATCCCGGAGACACTGCACA 978
Query 946 ATCATAAGCTGGGCAGCACATCACATGATGACTCATACGAAATACTTGAAGCTGCATCTC 1005
|||||||||||| |||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 979 ATCATAAGCTGGACAGCTTATCACATGATGATTCATACGATATACTTGAAGCTGCATCTC 1038
Query 1006 ATGAATC--CT-CTGCTATCGAGAAGGCAGGAAAAAACGAAAGAAAGGCTTCTCAGTCTC 1062
||||||| || || ||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1039 ATGAATCATCTCCTTCTACCGGGAAGGCAGGAAAAAACGAAAGAAAGGCTTCTCAGTCTC 1098
Query 1063 TCTTGAAGAATTGGCCCCTAATGTCATCTATCATTGTGTATTGTGTTCTGTGTCTGCATG 1122
|||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1099 TCTTGAAGAATTGGCCGCTGATGTCATCTATCATTGTGTATTGTGTTCTGTGTCTTCATG 1158
Query 1123 ATACTGCATACTCTGAGATATTTGCACTATGGGCTAACAGTCCAAGGAAGTACGGAGGTC 1182
||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1159 ATACTGCATACTCGGAGATATTTGCACTATGGGCTAACAGTCCAAGGAAGTATGGAGGTC 1218
Query 1183 TGAGCTACTCAACCAATGATGTCGGTACAGTTCTTGCTATATCAGGTCTTGGCCTATTCT 1242
||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||||||||
Sbjct 1219 TGAGCTACTCAACGAATGAAGTCGGTACAGTTCTTGCTATCTCAGGTCTCGGCCTATTCT 1278
Query 1243 CTTTTCAGGTATTTGTTTATCCGTTCGCTGAGAAACTGCTAGGACCTGTTCTGGTCACCC 1302
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1279 CTTTTCAGGTATTTGTTTATCCTTTGGCTGAGAAACTGCTAGGACCTGTTCTGGTCACCC 1338
Query 1303 GATATGCTGGGGCACTGATGATACCTATACAAATGAGTTATCCATTTATAGCAAGCTTAT 1362
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1339 GATATGCTGGGGCACTGATGATACCTATACAAATGAGTTATCCATTTATAGCAGGCTTGT 1398
Query 1363 CAGGTCTCAGTCTAAGCTTGATGTTAAATTGTGCATCAATCCTCATAAATGTGCT-AAGT 1421
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1399 CAGGTCTCAGTCTAAGCTTGATGTTAAATTGTGCATCAATCCTCATAAATGT-CTTAAGT 1457
Query 1422 GTGTCTGCCATAACCGGCCTGTTGATCCTTCAAAATAAAGCAGTGGATCAAAGCCAAAGA 1481
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct 1458 GTGTCTGCCATAACCGGCCTGTTGATCCTTCAAAATAGAGCAGTGGATCAGAGCCAAAGA 1517
Query 1482 GGGGCGGCTAATGGAATAGCTATGACTGCGATGTCTCTCTTTAAAACCGTTGGACCAGCT 1541
|||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||
Sbjct 1518 GGGGCGGCTAATGGAATAGCTATGACTGCGATGTCTCTATTTAAGACAGTTGGACCAGCT 1577
Query 1542 GGTGCTGGCATCTTATTTTCTTGGAGTGAGAGGCGATTAAACGCTGCATTTCTACCAGGA 1601
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1578 GGTGCTGGCATCTTATTTTCTTGGAGTGAGAGGCGACTAAACGCTGCATTTCTACCAGGA 1637
Query 1602 TCGCATATGGTGTTCTTCGTCCTGAATGTGATAGTTGTTGTTGGAGTAGCTCTCACATTC 1661
||||||||||| ||||||||| ||||||||||||| || || ||||||||||| ||||||
Sbjct 1638 TCGCATATGGTATTCTTCGTCTTGAATGTGATAGTAGTGGTCGGAGTAGCTCTGACATTC 1697
Query 1662 AAGCCTTTTCTAGTAACGGGTCGAAGATGAAAATTCATTTGAATTGGTAAGATAGGGAAT 1721
||||| |||||| ||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1698 AAGCCATTTCTAACGACGAGTCGAAGATGAAA-TTCATTTGAATTGGTAAGATAGGGAAT 1756
Query 1722 GTATGGACATGTTGATTCATTTAATTTCAGATTCAAAAGAAACCCGTAATAAAATTTCAC 1781
||||||||| |||||||| ||| ||||||||| | ||||||||| |||||||||||||||
Sbjct 1757 GTATGGACAAGTTGATTCTTTTCATTTCAGATACGAAAGAAACCGGTAATAAAATTTCAC 1816
Query 1782 TAACCTTAGGATTTCAGCTTCTTCTATTTGTTGTCCTTTACTCCTTTTGTTTTGCTTTGT 1841
||||||||||||||||||| |||||||| ||||||||| | ||||||||||||
Sbjct 1817 TAACCTTAGGATTTCAGCTCCTTCTATTACTTGTCCTTT--T------GTTTTGCTTTGT 1868
Query 1842 CTGATTATT 1850
|||||||||
Sbjct 1869 CTGATTATT 1877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92720406615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5