BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488196
Length=1774
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13750.1 | Symbols: ZIFL1 | zinc induced facilitator-like 1 ... 2242 0.0
> AT5G13750.1 | Symbols: ZIFL1 | zinc induced facilitator-like
1 | chr5:4438200-4441579 FORWARD LENGTH=1845
Length=1845
Score = 2242 bits (1214), Expect = 0.0
Identities = 1449/1560 (93%), Gaps = 25/1560 (2%)
Strand=Plus/Plus
Query 54 GCCCTCATTAAAAC-CACATc----c-cccccAAAATTTTGGTTAGGATTTGATTCGATT 107
|||||||||||||| |||||| | ||||||||| || || ||||||||| |
Sbjct 53 GCCCTCATTAAAACACACATCATATCGCCCCCAAAA--TT--TT--GATTTGATT--A-G 103
Query 108 AGAGGTGTGTGAAAGAAAATGGCGGAAGAGTATACGGAGTGTTTGCTAGAGAATAAGTTC 167
||||||||||| ||||||||||||||||||| | ||||||||||||||||| || |||
Sbjct 104 AGAGGTGTGTG---GAAAATGGCGGAAGAGTATGCCGAGTGTTTGCTAGAGAAGAACTTC 160
Query 168 CATGAGGATTGTCCTGGCTGCAAAGTTGATCAGATGAAGAGGCTTCGCCGAGGATTTCCC 227
|||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 161 CATGAGGATTGTTCTGGCTGCAAGGTTGATCAGATGAAGAGGCTTCGCCGTGGATTTCCC 220
Query 228 TTATGGGAGCTTTTTACCGTTTGGATCATCGTTCTTTGCACTGCTCTGCCCATTTCTTCG 287
|| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 221 TTCTGGGAGCTTTTTACCGTTTGGATCATCGTTCTTTGCACCGCTTTGCCCATTTCTTCT 280
Query 288 CTTTTCCCATTTCTTTACTTTATGATTGATGATTTTAACATTGCAAAGAAGGAAGAGGAC 347
|| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 281 CTATTCCCCTTTCTCTACTTTATGATTGATGATTTCAACATTGCAAAGAAGGAAGAGGAC 340
Query 348 ATTGGTTTCTATGCTGGCTTTGTCGGTTGCTCTTTCATGCTCGGACGAGCGTTTACATCT 407
||||| ||||| ||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 341 ATTGGGTTCTACGCTGGATTTGTTGGTTGCTCTTTCATGCTCGGACGAGCTTTTACATCT 400
Query 408 GTGATC-TGGGGACTTGTGGCTGATCGTTATGGTAGAAAACCCGTAATCCTCATTGGAAC 466
||| | ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||
Sbjct 401 GTG-GCATGGGGACTTGTTGCTGATCGTTATGGTAGAAAACCTGTAATCCTCATAGGAAC 459
Query 467 CGCTTCAGTGGTCATTTTCAATACTCTGTTTGGCCTAAGTTTAAATTTCTGGATGGCCAT 526
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 460 CGCTTCAGTGGTCGTTTTTAATACTCTGTTTGGCCTAAGTTTAAATTTCTGGATGGCTAT 519
Query 527 CATCACAAGATTTTGCCTCGGAAGTTTCAACGGTTTACTTGGCCCTATCAAGGCTTACGC 586
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 520 TATCACAAGATTTTGCCTCGGTAGTTTCAACGGTTTACTTGGTCCTATCAAGGCTTACGC 579
Query 587 AATGGAAATATTCCGTGATGAGTATCAAGGTTTAGCACTCTCAGCAGTTAGTACAGCATG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 580 AATGGAAATATTCCGTGATGAGTATCAAGGTTTAGCACTCTCAGCAGTTAGTACAGCTTG 639
Query 647 GGGAATTGGACTCATCATTGGCCCTGCTATTGGAGGTTTTCTTGCTCAGCCTGCAACGCA 706
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 640 GGGAATTGGACTCATCATTGGCCCTGCTATAGGAGGTTTTCTTGCTCAGCCTGCAAAGCA 699
Query 707 ATATCCAAGTTTATTCTCACAGGACTCGATTTTTGGCAAATTTCCCTTCTTCTTGCCGTG 766
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 700 ATATCCAAGTTTATTCTCACAGGACTCCATTTTTGGCAAATTTCCCTTCTTTTTGCCATG 759
Query 767 CTTTGCAATATCCGTTTTTGCATTCTTGGTGACTATAATTTCATTACGGATTCCGGAAAC 826
||| ||||||||||||||||||||||||||||| ||| |||||| | |||||||||||||
Sbjct 760 CTTAGCAATATCCGTTTTTGCATTCTTGGTGACCATAGTTTCATCAAGGATTCCGGAAAC 819
Query 827 ATTGCACAATCACAAGTATGATGATGATGATGACTCTTTTGATGCTCTCAAAGATTTGTC 886
||||||||||||||||| | |||||||||| | |||| |||||||||||||||||||||
Sbjct 820 ATTGCACAATCACAAGTTTAATGATGATGA-G--TCTTATGATGCTCTCAAAGATTTGTC 876
Query 887 TCATGACCCTGAATCTAACAAAGTGGCAGAGAGAAATGAAAAAAGTTCTCTCTTGAACAA 946
| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 877 TGATGACCCTGAATCTAATAAAGTGGCAGAGAGAAATGGAAAAAGTTCTCTCTTGAACAA 936
Query 947 CTGGCCACTAATTTCATCTATCATCGTCTACTGCATCTTTTCACTACATGATATGGCTTA 1006
||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 937 CTGGCCATTAATTTCATCTATCATCGTATACTGCGTCTTTTCACTACATGATATGGCTTA 996
Query 1007 CACAGAGATCTTTTCATTGTGGGCAAACAGCCCGAGGAAATATGGAGGTTTGGGATACTC 1066
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 997 CACAGAGATCTTTTCATTGTGGGCAAACAGTCCGAGGAAATATGGAGGTTTGGGATACTC 1056
Query 1067 TACTGCAGATGTTGGTTCTGTTCTTGCAATTTCAGGCTTTGGTCTTCTTATCTTTCAGCT 1126
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1057 CACTGCAGATGTTGGTTCTGTTCTTGCCTTTTCAGGCTTTGGTCTCCTTATCTTTCAGCT 1116
Query 1127 TTCGCTCTACTCTTACGCGGAGAGGCTTTTAGGACCCATCATAGTTACACGAATATCTGG 1186
|||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1117 TTCGCTCTACTCTTACGCAGAGAGGCTTTTAGGACCTATCATAGTTACACGTATATCTGG 1176
Query 1187 GACCCTGGCAATGGTCATCTTATCATGTTACCCCCTAATAGCAAAGTTATCTGGTTTAGC 1246
|| ||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1177 GAGCCTAGCAATGGTCGTCTTATCATGTTACCCACTAATAGCAAAGTTATCTGGTTTAGC 1236
Query 1247 CCTTACCCTGGCGGTAAATTCTGCATCGGTAGCAAAGAACGTTTTAAGTACTTCTGCTAT 1306
||||||| || | |||| ||||||||| |||||||||| |||||| |||||||||||||
Sbjct 1237 CCTTACCGTGACTGTAACTTCTGCATCCGTAGCAAAGAGTGTTTTAGGTACTTCTGCTAT 1296
Query 1307 AACTGGATTATTCATCCTTCAAAACAATGCTGTGAGACAAGACCAAAGAGGAGCAGCTAA 1366
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1297 AACTGGATTATTCATCCTTCAAAACAAGGCTGTGAGACAAGACCAAAGAGGAGCAGCTAA 1356
Query 1367 TGGGATTGCCATGACAGCGATGTCTCTTTTTAAAGCAATAGGTCCAGCGGCAGCAGGAAT 1426
||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 1357 TGGAATTGCCATGACAGCGATGTCTCTTTTCAAAGCCATAGGTCCAGCAGCAGCAGGAAT 1416
Query 1427 CATTTTTTCTTGGAGCGAGAAACGTCAAGATGCTGCTTT-CTTCCCTGGCACCCAAATGG 1485
||||||||| ||||||||||||||||| | ||||||||| || |||||||||||||||||
Sbjct 1417 CATTTTTTCGTGGAGCGAGAAACGTCAGGGTGCTGCTTTTCT-CCCTGGCACCCAAATGG 1475
Query 1486 TATTCTTTATCCTGAATGTGGTCTTGGCACTTGGAGTTCTATTGACATTCAAACCGTTTC 1545
|||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||
Sbjct 1476 TATTCTTTATACTGAATGTGGTTTTGGCACTTGGAGTTGTATTGACATTCAAACCATTTC 1535
Query 1546 TAGCTGAAACACAACAGTAGAAAGTGTTGAAGATTTTGATGGTATTCAAATTACATCATC 1605
||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||
Sbjct 1536 TAGCTGAAACACAACAGTAGAAAATGATGAAGATTTTGATGGTATTCAAATTACATAATC 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87750552660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5