BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg488199 Length=1972 Score E Sequences producing significant alignments: (Bits) Value AT5G13760.1 | Symbols: | Plasma-membrane choline transporter f... 2867 0.0 > AT5G13760.1 | Symbols: | Plasma-membrane choline transporter family protein | chr5:4442014-4444935 FORWARD LENGTH=2168 Length=2168 Score = 2867 bits (1552), Expect = 0.0 Identities = 1742/1832 (95%), Gaps = 19/1832 (1%) Strand=Plus/Plus Query 2 ttttttttGCAAAACATTCCAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 61 ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 13 TTTATTTTGCCAAACATTCTAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 72 Query 62 GTCACCAAACTTGTCAATGGGTGCCACTGAGCCCGCGGTGGTggagagagagaggaaag- 120 |||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 73 GTCACCAAACCTGTCAATGGGTGCAACAGAGCCCGCGGTGGTGGAGAGAGAGAGGAAAGA 132 Query 121 -aaa-cagagaagcaaagagaag-caaaggcagt-g--g-tggagga--aggagaagaaT 171 ||| |||||||||||||||||| | |||||||| | | |||||| || |||||||| Sbjct 133 AAAATCAGAGAAGCAAAGAGAAGTC-AAGGCAGTGGAAGAGGGAGGAGGAGAAGAAGAAT 191 Query 172 CAAAGGATAAAGATGAAATCAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 231 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 192 CAAAGGATAAAGATGAAATAAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 251 Query 232 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACGCCTCCGCCTC 291 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 252 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACTCCTCCGCCTC 311 Query 292 CTAATCTCGCCCAACCAATCCGATCTTCCTCTAGATATCCTCCTCCGCCGCCACCACGGC 351 ||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| Sbjct 312 CTAATCTCGCCCAACCACTCCGATCTTCCTCTAGACAGCCTCCTCCGCCGCCACCACGGC 371 Query 352 CGCAGACGCCTCCTGCTTTCGCT-CCAGAAGAACCTCAGCCTCAGACCCCTCCGCCGTCA 410 |||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||| || Sbjct 372 CGCAGACGCCTCCTACTTTCG-TGCCAGAAGAAACTCAGCCACAGACTCCTCCGCCGCCA 430 Query 411 AATCAACATCAAACTCGTTCCATCTTCACACCAACCCCTCAACAAACGTTGGCATCATTG 470 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 431 AATCAACATCAAACTCGTTCCATCTTCACACCTACCCCTCAACAAACGTTGGCATCATTG 490 Query 471 AATTCCACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 530 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 491 AATTCAACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 550 Query 531 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTCCAAGGTCTAATTGGATCCAAT 590 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 551 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTTCAAGGTCTAATTGGATCAAAT 610 Query 591 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTTTTACTTCCACAAGTCGAAGCT 650 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 611 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTCTTACTTCCACAAGTCGAAGCT 670 Query 651 GCATCGCTCTTGAGCATCATTCTTGCATTCCTATGGCAGATGGCATTCAGGCTTTGGCCT 710 |||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| Sbjct 671 GCATCGCTCTTGAGCATCATTCTTGCATTCCTTTGGCAAATGGCATTCAGGATTTGGCCT 730 Query 711 GATTTCATGATTCACTTCATACTTTGGAGTACCTTTTTGATGTCTCTATCCTCAGGAATC 770 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| Sbjct 731 GATTTCATGATTCACTTCATACTTTGGAGTACGTTTTTGATGTCTTTATCCTCAGGAATC 790 Query 771 CTCTTACTGTGTTTCCAGATGCCAACTACCGATGCTGTTGGGGTTTGCCTCATCGCGTTC 830 |||||||||||||||||||||||| | || ||||||||||||||||||||||| || ||| Sbjct 791 CTCTTACTGTGTTTCCAGATGCCAGCCACTGATGCTGTTGGGGTTTGCCTCATTGCCTTC 850 Query 831 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGCAGAATCAAATTTTGTTCTAAG 890 |||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| Sbjct 851 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGTAGAATCAAGTTCTGTTCTAAG 910 Query 891 ATTTTGGTCAAGTCGTTAGAACCTGTCTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 950 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 911 ATTTTGGTCAAGTCGTTAGAACCTGTTTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 970 Query 951 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTCTTTGGATTTTCGGTGTCATCGGTGCC 1010 ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| Sbjct 971 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTATGTGGATTTTCGGTGTCATCGGTGCC 1030 Query 1011 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGCCTGGCTTGGACG 1070 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1031 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGTCTGGCTTGGACG 1090 Query 1071 ACAGAAGTGATGAGGAATGTTGTTAATCTAACTGTGAGTCGGGTCATTGCTTTGTACTAT 1130 |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| Sbjct 1091 ACAGAAGTGATGAGGAATATTGTTAATCTAACTGTGAGCCGGGTCATTGCTTTGTACTAT 1150 Query 1131 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1151 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1210 Query 1191 GGGAGTGCATGTTTGGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1250 ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1211 GGGAGCGCGTGTTTAGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1270 Query 1251 AGAGGACTGAATTTGCTCAAGGGTGAAGACGAGTTTATGTTTTGCTGCGCTAATTGCTGT 1310 |||||| | |||||||| ||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1271 AGAGGATTAAATTTGCTAAAGGGTGAAGATGAGTTCATGTTTTGCTGCGCTAATTGCTGT 1330 Query 1311 CTCAGACTCATGGACTTCATATTCGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1370 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1331 CTCAGACTCATGGACTTCATATTTGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1390 Query 1371 GCTTATGGGAAAGGATTTGTGAGGGCGTCGCAAGACACATGGAAACTGTTTGAGGATGAA 1430 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1391 GCTTATGGGAAAGGATTTGTGAGGGCATCGCAAGACACATGGAAACTGTTTGAGGATGAA 1450 Query 1431 GATATGGTTGAAATCGTAGATGCAGACATAACAAGCTCCATTTGCTTCCTCACGGGCATC 1490 |||||||||||||| |||||||||||||||||||||||||| |||||||| || |||||| Sbjct 1451 GATATGGTTGAAATAGTAGATGCAGACATAACAAGCTCCATATGCTTCCTTACAGGCATC 1510 Query 1491 TGCAGCGGCTGCGTCTGTTTAATTGCCGCAGCCGCTTGGACTCATACAGTTTACAAACCT 1550 |||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 1511 TGCAGCGGCTGCGTTTGTTTAATTGTCGCAGCCGCTTGGACTCACACAGTTTACAAACCT 1570 Query 1551 TTTACAGCCACCATCTCCTTACTTGCCTTCTTCATTGGGTACCTCATGACCAGGATCTCA 1610 ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| Sbjct 1571 TTTACAGCCACCATCTCTTTACTTGCCTTCTTCATTGGATACCTCATGACCAGGATCTCT 1630 Query 1611 ATGGCATTGCCTCAAGCCTGCGTAGGTTGCTACTACATGTGCTACGCCGAAAATCCGGAA 1670 |||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 1631 ATGGCATTGCCTCACGCCTGCGTAGGTTGCTACTACACGTGCTATGCCGAAAATCCGGAA 1690 Query 1671 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1730 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1691 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1750 Query 1731 GTTGCTGT--C-A---CCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTTCTTATCTC 1784 ||||| || | | ||||||||||||||||||||||||||||||||||| | |||| Sbjct 1751 GTTGCCGTTACCAGTACCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTGATCATCTT 1810 Query 1785 TTTTTCCTTCGTGCTAAATTTTCAGAATGAAA 1816 ||||||||| |||||||||||||||||||||| Sbjct 1811 TTTTTCCTTGGTGCTAAATTTTCAGAATGAAA 1842 Score = 58.4 bits (31), Expect = 3e-07 Identities = 36/38 (95%), Gaps = 2/38 (5%) Strand=Plus/Plus Query 1936 GTTGGTT-TTGAGACCCCTCAATTACTTTCTGTACATA 1972 ||| ||| |||||||||||||||||||||||||||||| Sbjct 2039 GTT-GTTGTTGAGACCCCTCAATTACTTTCTGTACATA 2075 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 97690260570 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5