BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488199
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13760.1 | Symbols: | Plasma-membrane choline transporter f... 2867 0.0
> AT5G13760.1 | Symbols: | Plasma-membrane choline transporter
family protein | chr5:4442014-4444935 FORWARD LENGTH=2168
Length=2168
Score = 2867 bits (1552), Expect = 0.0
Identities = 1742/1832 (95%), Gaps = 19/1832 (1%)
Strand=Plus/Plus
Query 2 ttttttttGCAAAACATTCCAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 61
||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 13 TTTATTTTGCCAAACATTCTAAAGACGACAGATAGACGACCGCCGTCGCCGGAAAGTGAC 72
Query 62 GTCACCAAACTTGTCAATGGGTGCCACTGAGCCCGCGGTGGTggagagagagaggaaag- 120
|||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 73 GTCACCAAACCTGTCAATGGGTGCAACAGAGCCCGCGGTGGTGGAGAGAGAGAGGAAAGA 132
Query 121 -aaa-cagagaagcaaagagaag-caaaggcagt-g--g-tggagga--aggagaagaaT 171
||| |||||||||||||||||| | |||||||| | | |||||| || ||||||||
Sbjct 133 AAAATCAGAGAAGCAAAGAGAAGTC-AAGGCAGTGGAAGAGGGAGGAGGAGAAGAAGAAT 191
Query 172 CAAAGGATAAAGATGAAATCAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 231
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 192 CAAAGGATAAAGATGAAATAAGTCATCATAGATTTTTGGCGAGCTTGAACAGATTAAACC 251
Query 232 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACGCCTCCGCCTC 291
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 252 CAACTAACCCTCTTAGGATCATTGTTAATGGCGGCTCTAGATTCACTACTCCTCCGCCTC 311
Query 292 CTAATCTCGCCCAACCAATCCGATCTTCCTCTAGATATCCTCCTCCGCCGCCACCACGGC 351
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 312 CTAATCTCGCCCAACCACTCCGATCTTCCTCTAGACAGCCTCCTCCGCCGCCACCACGGC 371
Query 352 CGCAGACGCCTCCTGCTTTCGCT-CCAGAAGAACCTCAGCCTCAGACCCCTCCGCCGTCA 410
|||||||||||||| |||||| | ||||||||| ||||||| ||||| ||||||||| ||
Sbjct 372 CGCAGACGCCTCCTACTTTCG-TGCCAGAAGAAACTCAGCCACAGACTCCTCCGCCGCCA 430
Query 411 AATCAACATCAAACTCGTTCCATCTTCACACCAACCCCTCAACAAACGTTGGCATCATTG 470
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 431 AATCAACATCAAACTCGTTCCATCTTCACACCTACCCCTCAACAAACGTTGGCATCATTG 490
Query 471 AATTCCACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 530
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AATTCAACAAAGTACACAAACAAGTTCTTTCTGCTGCTCTTCATCTTTCACAAGGTTGTG 550
Query 531 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTCCAAGGTCTAATTGGATCCAAT 590
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 551 GCTATTGGGTTTGTAGGCTTCCTTGTCTTCAGAGGCGTTCAAGGTCTAATTGGATCAAAT 610
Query 591 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTTTTACTTCCACAAGTCGAAGCT 650
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 611 GGTAGCGTCAAAAGGAAAGAGAAAAAGATCCTCAGATTCTTACTTCCACAAGTCGAAGCT 670
Query 651 GCATCGCTCTTGAGCATCATTCTTGCATTCCTATGGCAGATGGCATTCAGGCTTTGGCCT 710
|||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||
Sbjct 671 GCATCGCTCTTGAGCATCATTCTTGCATTCCTTTGGCAAATGGCATTCAGGATTTGGCCT 730
Query 711 GATTTCATGATTCACTTCATACTTTGGAGTACCTTTTTGATGTCTCTATCCTCAGGAATC 770
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 731 GATTTCATGATTCACTTCATACTTTGGAGTACGTTTTTGATGTCTTTATCCTCAGGAATC 790
Query 771 CTCTTACTGTGTTTCCAGATGCCAACTACCGATGCTGTTGGGGTTTGCCTCATCGCGTTC 830
|||||||||||||||||||||||| | || ||||||||||||||||||||||| || |||
Sbjct 791 CTCTTACTGTGTTTCCAGATGCCAGCCACTGATGCTGTTGGGGTTTGCCTCATTGCCTTC 850
Query 831 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGCAGAATCAAATTTTGTTCTAAG 890
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 851 TCAATTGGCAATGGTTTATATGCTTGCTGGGTCACTCGTAGAATCAAGTTCTGTTCTAAG 910
Query 891 ATTTTGGTCAAGTCGTTAGAACCTGTCTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 950
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 911 ATTTTGGTCAAGTCGTTAGAACCTGTTTCCAAGTTCTCGGATTTGAATTTGCCCACCTAC 970
Query 951 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTCTTTGGATTTTCGGTGTCATCGGTGCC 1010
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 971 TACATGCTAGCTGCTGGTTTCCTCTGGATGTCTATGTGGATTTTCGGTGTCATCGGTGCC 1030
Query 1011 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGCCTGGCTTGGACG 1070
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1031 TTGAACTTCTATTTTCCGCCACTTGTGATTATTGGTTTGGTGTTAAGTCTGGCTTGGACG 1090
Query 1071 ACAGAAGTGATGAGGAATGTTGTTAATCTAACTGTGAGTCGGGTCATTGCTTTGTACTAT 1130
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1091 ACAGAAGTGATGAGGAATATTGTTAATCTAACTGTGAGCCGGGTCATTGCTTTGTACTAT 1150
Query 1131 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 CTTAGGGGAATGCAGTCTAGTACCAGGTTTAGTTTCCAAAGGGCCTTGTCTCGTAACCTC 1210
Query 1191 GGGAGTGCATGTTTGGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1250
||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GGGAGCGCGTGTTTAGGATCTTTGTTTGTTCCAACAATAGAAGCCTTAAGAATCTTGGCA 1270
Query 1251 AGAGGACTGAATTTGCTCAAGGGTGAAGACGAGTTTATGTTTTGCTGCGCTAATTGCTGT 1310
|||||| | |||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1271 AGAGGATTAAATTTGCTAAAGGGTGAAGATGAGTTCATGTTTTGCTGCGCTAATTGCTGT 1330
Query 1311 CTCAGACTCATGGACTTCATATTCGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1370
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1331 CTCAGACTCATGGACTTCATATTTGAACATGGCAATGGCTGGGCCTTTGTACAGATAGCG 1390
Query 1371 GCTTATGGGAAAGGATTTGTGAGGGCGTCGCAAGACACATGGAAACTGTTTGAGGATGAA 1430
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1391 GCTTATGGGAAAGGATTTGTGAGGGCATCGCAAGACACATGGAAACTGTTTGAGGATGAA 1450
Query 1431 GATATGGTTGAAATCGTAGATGCAGACATAACAAGCTCCATTTGCTTCCTCACGGGCATC 1490
|||||||||||||| |||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 1451 GATATGGTTGAAATAGTAGATGCAGACATAACAAGCTCCATATGCTTCCTTACAGGCATC 1510
Query 1491 TGCAGCGGCTGCGTCTGTTTAATTGCCGCAGCCGCTTGGACTCATACAGTTTACAAACCT 1550
|||||||||||||| |||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 1511 TGCAGCGGCTGCGTTTGTTTAATTGTCGCAGCCGCTTGGACTCACACAGTTTACAAACCT 1570
Query 1551 TTTACAGCCACCATCTCCTTACTTGCCTTCTTCATTGGGTACCTCATGACCAGGATCTCA 1610
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1571 TTTACAGCCACCATCTCTTTACTTGCCTTCTTCATTGGATACCTCATGACCAGGATCTCT 1630
Query 1611 ATGGCATTGCCTCAAGCCTGCGTAGGTTGCTACTACATGTGCTACGCCGAAAATCCGGAA 1670
|||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1631 ATGGCATTGCCTCACGCCTGCGTAGGTTGCTACTACACGTGCTATGCCGAAAATCCGGAA 1690
Query 1671 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 AGCAGATTCTTCGAAGACAAAGTGATAAAAACTAGGCAAGATATGATCAAAAGTGGCCGT 1750
Query 1731 GTTGCTGT--C-A---CCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTTCTTATCTC 1784
||||| || | | ||||||||||||||||||||||||||||||||||| | ||||
Sbjct 1751 GTTGCCGTTACCAGTACCACCCCTAGAGTTCGCCGTGCTCTAGCTTAGCCTGATCATCTT 1810
Query 1785 TTTTTCCTTCGTGCTAAATTTTCAGAATGAAA 1816
||||||||| ||||||||||||||||||||||
Sbjct 1811 TTTTTCCTTGGTGCTAAATTTTCAGAATGAAA 1842
Score = 58.4 bits (31), Expect = 3e-07
Identities = 36/38 (95%), Gaps = 2/38 (5%)
Strand=Plus/Plus
Query 1936 GTTGGTT-TTGAGACCCCTCAATTACTTTCTGTACATA 1972
||| ||| ||||||||||||||||||||||||||||||
Sbjct 2039 GTT-GTTGTTGAGACCCCTCAATTACTTTCTGTACATA 2075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97690260570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5