BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488201
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13780.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1459 0.0
AT5G13770.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 307 1e-82
AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 80.5 3e-14
> AT5G13780.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr5:4447259-4448646 REVERSE LENGTH=973
Length=973
Score = 1459 bits (790), Expect = 0.0
Identities = 919/979 (94%), Gaps = 18/979 (2%)
Strand=Plus/Plus
Query 1 AACCCTAACCCCTCTTTATCCGCGCGAGAGAGAATTGAGCAGCCATGGTTTGCATCAGGC 60
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AACCCTAACCCCTCTTTATCCGCGCGAGAG-CAATTGAGCAGCCATGGTTTGCATCAGGC 59
Query 61 GAGCGACGGTGGATGATCTGCTGGCGATGCAAGCCTGCAATCTCATGTGTCTTCCCGAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 60 GAGCGACGGTGGATGATCTGCTGGCGATGCAAGCCTGCAATCTCATGTGTCTTCCTGAGA 119
Query 121 ACTACCAGATGAAGTACTACCTCTACCACATCCTCTCATGGCCTCAGCTTCTCTACGTCG 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 120 ACTACCAGATGAAGTACTACCTCTACCATATCCTCTCATGGCCTCAGCTTCTCTACGTCG 179
Query 181 CCGAGGACTACAATGGTCGCATCGTTGGCTACGTGTTGGCCAAGATGGAGGAAGAGAGCA 240
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 180 CCGAGGACTACAATGGTCGCATCGTTGGCTATGTCTTGGCTAAGATGGAGGAAGAGAGCA 239
Query 241 ACGAGTGCCACGGCCATATCACTTCTCTCGCCGTTCTTCGTACCCATCGCAAGCTCGGTC 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 ACGAGTGCCACGGCCACATCACTTCTCTCGCCGTTCTTCGTACCCATCGCAAGCTCGGTC 299
Query 301 TCGCCACTAAGCTCATGACCGCCGCTCAGGCAGCTATGGAACAGGTTTACGAGGCAGAGT 360
|||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||
Sbjct 300 TCGCCACTAAGCTCATGACCGCCGCTCAAGCTGCCATGGAACAGGTTTACGAGGCTGAGT 359
Query 361 ATGTTTCGCTGCACGTGAGGAGAAGTAACCGAGCAGCATTCAATCTGTACACAGAGACAT 420
|||||||| |||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 360 ATGTTTCGTTGCATGTGAGGAGAAGTAACCGAGCAGCATTCAATCTATACACTGAGACAT 419
Query 421 TAGGCTACAAGATTAATGATGTAGAAGCAAAGTATTACGCTGATGGGGAGGATGCTTATG 480
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 420 TAGGCTACAAGATTAATGATGTAGAAGCAAAGTACTACGCCGATGGGGAGGATGCTTATG 479
Query 481 ACATGCGGAAGAATCTCAAGGGGAAGCAGAACCATCACCATGCCCACGGTCATCA-C--C 537
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
Sbjct 480 ACATGCGGAAGAATCTCAAGGGGAAGCAGAACCATCACCACGCCCACGGTCATCATCATC 539
Query 538 ACCATGGAGGTGGATGCTGTTCAGGTGATGCAAAAGTTGTAGAAACAGCTCAAGCCGTAG 597
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 540 ACCATGGAGGAGGATGTTGTTCTGGTGATGCAAAAGTTGTAGAAACAGCTCAAGCCGTAG 599
Query 598 ACGCTAAAGCAGTTTCGAAGTGAAACAT-GAAAACAGGTAATTATGAGTATATTGAGGTG 656
| | |||||||||||| || ||| | | |||| ||| ||||||||||||||||||||||
Sbjct 600 ATGGTAAAGCAGTTTCCAAATGAGAT-TCGAAAGCAGATAATTATGAGTATATTGAGGTG 658
Query 657 GGTTCGCTGGCTCGCTCTAGTACTGCTCACTATTTTCCATTCATATGATTTCGTGTGACA 716
||||| |||||||||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct 659 GGTTCACTGGCTCGCTCTAGTACTTCTCACTATTT-CCATTCATATGATTCCGAGTGACA 717
Query 717 AAAATACATTTGGTGGCCACTCTGTGTTACTCCTTAGTCTTTCTTTGGTTGTATTGAAA- 775
|| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 718 AA--TACATTTGGTGACCACTCTGTGTTACTCCTTTGTCTTTCTTTGGTTGTATTGAAAA 775
Query 776 TTTAGCCGttt-tttttttCTATGTATTATGTTTTGGAAATTCCAAGCTTTCATTAAGGC 834
|||||||||| ||||||| |||||| || ||| |||||||||||||||||||||||||
Sbjct 776 TTTAGCCGTTCCTTTTTTTG-ATGTATCAT-TTT-GGAAATTCCAAGCTTTCATTAAGGC 832
Query 835 TTTACAACTTCAGCTGGAAATCTTCTATTTGCAAGATAGCAGATCTCTATTGGCAATATA 894
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TTTACAACTTAAGCTGGAAATCTTCTATTTGCAAGATAGCAGATCTCTATTGGCAATATA 892
Query 895 TTACATTTAATTACaa-aaaaa-a-TCTTGGCTTGTACAGTTT-CCCTTTCAACTTAAAG 950
||||||||||||||| ||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 893 GTACATTTAATTACAAGAAAAATAATCTTGGCTTGTACAGTTTTCCCTTTCAACTTAAAG 952
Query 951 TTCTTGTGTTCTTCGTATT 969
||| ||||||||| |||||
Sbjct 953 TTCCTGTGTTCTTTGTATT 971
> AT5G13770.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr5:4445423-4447476 FORWARD LENGTH=2054
Length=2054
Score = 307 bits (166), Expect = 1e-82
Identities = 203/219 (93%), Gaps = 9/219 (4%)
Strand=Plus/Minus
Query 757 TTCTTTGGTTGTATTG-AAATTTAGCCGtt-ttttttttCTATGTATTATGTTTTGGAAA 814
|||||||||||||||| ||||||||||||| ||||||| |||||| | |||||||||
Sbjct 2054 TTCTTTGGTTGTATTGAAAATTTAGCCGTTCCTTTTTTT-GATGTATCA--TTTTGGAAA 1998
Query 815 TTCCAAGCTTTCATTAAGGCTTTACAACTTCAGCTGGAAATCTTCTATTTGCAAGATAGC 874
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1997 TTCCAAGCTTTCATTAAGGCTTTACAACTTAAGCTGGAAATCTTCTATTTGCAAGATAGC 1938
Query 875 AGATCTCTATTGGCAATATATTACATTTAATTACaa-aaaaa-a-TCTTGGCTTGTACAG 931
|||||||||||||||||||| ||||||||||||||| ||||| | |||||||||||||||
Sbjct 1937 AGATCTCTATTGGCAATATAGTACATTTAATTACAAGAAAAATAATCTTGGCTTGTACAG 1878
Query 932 TTT-CCCTTTCAACTTAAAGTTCTTGTGTTCTTCGTATT 969
||| ||||||||||||||||||| ||||||||| |||||
Sbjct 1877 TTTTCCCTTTCAACTTAAAGTTCCTGTGTTCTTTGTATT 1839
> AT1G18773.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
endomembrane system; BEST Arabidopsis thaliana protein match
is: carboxylesterases (TAIR:AT4G22300.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr1:6474802-6475904
FORWARD LENGTH=850
Length=850
Score = 80.5 bits (43), Expect = 3e-14
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 231 GAAGAGAGCAACGAGTGCCACGGCCATATCACTTCTCTCGCCGTTC 276
||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 137 GAAGAGAGCAATGAGTGCCACGGCCATATCACTTCTCTCGCCGTTC 182
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5