BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488202
Length=933
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13790.1 | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449014-4... 1301 0.0
> AT5G13790.1 | Symbols: AGL15 | AGAMOUS-like 15 | chr5:4449014-4450843
REVERSE LENGTH=962
Length=962
Score = 1301 bits (704), Expect = 0.0
Identities = 864/939 (92%), Gaps = 20/939 (2%)
Strand=Plus/Plus
Query 1 GAAGATGGGTCGTGGAAAAATCGAGATTAAGAGGATCGAGAATGCCAATAGCAGACAAGT 60
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 38 GAAAATGGGTCGTGGAAAAATCGAGATAAAGAGGATCGAGAATGCGAATAGCAGACAAGT 97
Query 61 TACTTTCTCCAAGAGGCGTTCTGGGTTGCTTAAGAAAGCTCATGAGCTCTCTGTTCTTTG 120
||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 98 CACTTTTTCCAAGAGGCGTTCTGGGTTACTTAAGAAAGCTCGTGAGCTCTCTGTTCTTTG 157
Query 121 TGATGCTGAGGTTGCTGTCATCGTCTTCTCTAAGTCTGGCAAGCTCTTCGAGTTCTCCAG 180
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 158 TGATGCTGAAGTTGCTGTCATCGTCTTCTCTAAGTCTGGCAAGCTCTTCGAGTACTCCAG 217
Query 181 TACTGGAATGAAGAAAACACTTTCGAGATACGGCAATCACCAGAGTTCTTCAGCTTCTAA 240
||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 218 TACTGGAATGAAGCAAACACTTTCCAGATACGGTAATCACCAGAGTTCTTCAGCTTCTAA 277
Query 241 AGCAGAGGAGGATTGTGCAGAGGTGGATCTTTTAAAGGATGAACTTTCAAAGCTTCAAGA 300
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 278 AGCAGAGGAGGATTGTGCAGAGGTGGATATTTTAAAGGATCAACTTTCAAAGCTTCAAGA 337
Query 301 GAAACATTTACAACTGCAGGGTAAGGGCTTGAATATTCTGACCTTTAAAGAGCTGCATAA 360
||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||
Sbjct 338 GAAACATTTACAACTGCAGGGCAAGGGCTTGAATCCTCTGACCTTTAAAGAGCTGCA-AA 396
Query 361 -CCTTGAGCAGCAACTATATCATGCCTTGATTACTGTGAGAGAGCGGAAGGAACGATTGC 419
|||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 397 GCCTTGAGCAGCAACTATATCATGCATTGATTACTGTCAGAGAGCGAAAGGAACGATTGC 456
Query 420 TGACTAACCAACTTGAAGAATCACGCCTCAAGGAACAACAAGCAGAGTTGGAAAATGAGA 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 457 TGACTAACCAACTTGAAGAATCACGCCTCAAGGAACAACGAGCAGAGTTGGAAAACGAGA 516
Query 480 CCTTGCGTAGACAGGTTCAAGAACTCAGAAGCTTTCTCCCATCGTTCACCCACTATGTTC 539
||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 517 CCTTGCGTAGACAGGTTCAAGAACTGAGGAGCTTTCTCCCGTCGTTCACCCACTATGTTC 576
Query 540 CATCCTACATCAAATGCTTTGCGATAGATCCCAAGAACGCTGTCATAAACCATGGTTGCT 599
|||||||||||||||||||||| |||||||| ||||||||| |||||||||| |
Sbjct 577 CATCCTACATCAAATGCTTTGCTATAGATCCAAAGAACGCTCTCATAAACCA------C- 629
Query 600 TGGACGACAGTGAGTGCAGCCTCCAGAAGACCAATTCAGACACAACTTTGCAATTAGGGT 659
| || | || | |||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 630 -G-AC-A--GTAAATGCAGCCTCCAGAACACCGATTCAGACACAACTTTGCAATTAGGGT 684
Query 660 TGCCGGGAGAGGCACATGATAGAAGGAAGAATGAGGGAGACAGAGAGAGCCCGTCAAGCG 719
||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||
Sbjct 685 TGCCGGGAGAGGCACATGATAGAAGGACGAATGAAGGAGAAAGAGAGAGCCCGTCAAGCG 744
Query 720 ACTCAGTGACAACGAACACGACCAGAGAAACTGCACAAAG-G---ATCAGTCTAGTTTAG 775
| ||||||||||| ||||||| ||| ||||||||| |||| | |||||||||||||||
Sbjct 745 ATTCAGTGACAACAAACACGAGCAGCGAAACTGCAGAAAGAGGGGATCAGTCTAGTTTAG 804
Query 776 CAAATTCACCACCTGAAAACAAAAGCCAAATGTTCTCTGTTTAGTCGTAGAGAAGTATGA 835
||||||| ||||||||| |||||| |||| ||||||||||||||| |||| |||||||
Sbjct 805 CAAATTCTCCACCTGAAGCCAAAAGACAAAGGTTCTCTGTTTAGTCCTAGAAAAGTATGG 864
Query 836 GAGTGAGG-TACTAATGTTTCCTCTTTAGCAAGTATCCGATTATTTTAAAAGTAATTTTA 894
||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 865 GAGA-AGGCTACTAATGTTTCCTCTTTAGCAAGTATCCGATTGTTTTAAAAGTAATTTTA 923
Query 895 GAGGGATGCTTGCAAAAACAAGTGAAGATTAACTTATCT 933
||||||| |||||||||| ||| ||||||| | ||||||
Sbjct 924 GAGGGATACTTGCAAAAAGAAGAGAAGATTCAGTTATCT 962
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45612605476
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5