BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488205
Length=2437
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13820.1 | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 | t... 3363 0.0
> AT5G13820.1 | Symbols: TBP1, ATBP-1, ATBP1, ATTBP1, HPPBF-1 |
telomeric DNA binding protein 1 | chr5:4460894-4464666 FORWARD
LENGTH=2548
Length=2548
Score = 3363 bits (1821), Expect = 0.0
Identities = 2275/2479 (92%), Gaps = 92/2479 (4%)
Strand=Plus/Plus
Query 1 TCTTCTTCGTTATTTCTATTCTAG-A-agagagagagagaAAGACAAGGACGATCGCTAA 58
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 44 TCTTCTTCGTTATTTCTATTCTAGAAGAGAGAGAGAGAGAAAGACAAGGACGATCGTTAA 103
Query 59 ATCTTTTTTCTCTAAAATCTTAGAATTTCCAAGTCTCTGTAA--------AGTTTTCA-T 109
||| ||||||||| ||||||||||||||| |||||||||||| |||||| |
Sbjct 104 ATC-TTTTTCTCTTAAATCTTAGAATTTCAAAGTCTCTGTAATTTTTTTCTCTTTTCATT 162
Query 110 TGTATAGCACAATTGTTC-TAATCAGAGATTCGTGAGAGGTAAAGGTTGCGTAATTATTC 168
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 163 TGTATAGCACAATTGTTCTTAATCAGAGATTCGTGAGAGGTAAAGGTAGCGTAATTATTC 222
Query 169 AGTTTGCGTGATCTATATATAATTAACTGGCGCGATATTGTGATCCAGGACTCGTTGTTG 228
||||||||||||||||| || ||||||||||| | |||||||||||||| || ||||
Sbjct 223 AGTTTGCGTGATCTATA-AT--TTAACTGGCGCCAGATTGTGATCCAGGAATC---GTTG 276
Query 229 GCTAATTA-G--GTAGTTCTGTTATGCATAATTGAGAGATGGTGGTCAAAAGGAAGTT-A 284
||| ||| | || ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 277 GCTTGTTAGGTTGTTGTTTTGTTATGCATAATTGAGAGATGGTGGTCAAAAGGAAGTTAA 336
Query 285 A--GTTGTGGCTCTAAAGGTTTTGATTTCCCCAATATTCCCAAGGCTCCTCGTTCAAGCA 342
| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 ATTGTGGTGGCTCTAATGGTTTTGATTTCCCCAATATTCCCAAGGCTCCTCGTTCAAGCA 396
Query 343 GGAGGAAGGTGTCAGGTAAGAGAGCTGATGATGATTATGAAAGTGAGATCTGTGCAATTG 402
|||||||||| |||||||||||| | ||||| ||||||||||||||||||||||||
Sbjct 397 GGAGGAAGGTCTCAGGTAAGAGA--T-CTGATG---ATGAAAGTGAGATCTGTGCAATTG 450
Query 403 ATTTGCTTGCTTCTCTTGCTGGCAAGTTGCTGGAAGAAAGTGAAAGTTCCTCAACGTCTA 462
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 451 ATTTGCTAGCTTCTCTTGCTGGAAAGTTGTTGGAAGAAAGTGAAAGTTCCTCAACGTCTA 510
Query 463 CCTATGCATTTGAAGGTGATAATCTTGATCATTTGGGTGGAGTGGTTAAGCTTAAGCAAG 522
||||||||| ||||| ||||||||||||||||||||||||| | | | |||||||||
Sbjct 511 CCTATGCATCTGAAGCTGATAATCTTGATCATTTGGGTGGACT-G---A--TTAAGCAAG 564
Query 523 AACTTGAAGATGGCTATA--AC-AAGCCTTGTCTATCTAAGTTTTTCGATCAAGGAAACC 579
|||||||||||||||||| || ||||||||| ||| |||||||||||| ||||||||
Sbjct 565 AACTTGAAGATGGCTATACTACTAAGCCTTGTAAATCCGAGTTTTTCGATCCAGGAAACC 624
Query 580 CAGCTTCAAAGTCTACTAGTGAAAATACTAGTGTGACTTGTTTGCCATTTTCGTCTTTGG 639
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 625 CTGCTTCAAAGTCTACTAGTGAAAATACTAGCGTGACTTGTTTGCCATTTTCGTCTTTCG 684
Query 640 AAAATGATTGCATTTTGGAGCAAACACCGGTTTCTGATTGTAAGACGGCGTGTGGTTTGA 699
||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||
Sbjct 685 AAAATGATTGCATTTTGGAGCAAACACCGGTTTCTGATTGTAAGAGGGCATCTGGTTTGA 744
Query 700 AGTCCCTGGTA-GG-G-------GAGGAGACATGTGTTGTTAATGAGGATGCCGGGTCTG 750
||||||||||| || | |||||||||||||||||||||||||||||||| ||||
Sbjct 745 AGTCCCTGGTAGGGAGCATCACTGAGGAGACATGTGTTGTTAATGAGGATGCCGGATCTG 804
Query 751 AACAAGGAGAAGCA-AC-TGGTGCCTTAAAGGATCCAAGTCAATTACATTTGCAGTCTCC 808
||||||| | | || | | |||||||||||||||||||||||||| |||||||||
Sbjct 805 AACAAGGTG-CTAATACTTTCAG-CTTAAAGGATCCAAGTCAATTACATTCGCAGTCTCC 862
Query 809 AGAATCGGTCCATCTGGATGGAGATGTAAAATT-GCCACCATGCACGGATCAACTCCCTA 867
||||||||||| ||||||||| ||||| ||||| | ||||||||||||||||| ||||||
Sbjct 863 AGAATCGGTCCTTCTGGATGGCGATGTGAAATTAG-CACCATGCACGGATCAAGTCCCTA 921
Query 868 ATGATTCTTTTGAAGGATATGGGAATCATTCTAAGTTAGTTTGCAGAGATGATGACGAAA 927
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 922 ATGATTCTTTTAAAGGATATAGGAATCATTCTAAGTTAGTTTGCAGAGATGATGACGAAA 981
Query 928 ACTATTGTAAGTATTATAAATTTAGTGACAAATGTAAGTCATATAGGCCTCCCTTCCGGG 987
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 982 ACTATTGTAAGTATTATAAATTTAGTGACAAATGTAAGTCATATAGGCCTCTCTCCCGGG 1041
Query 988 TTAGAAATAGAAGAATAATGCAGTCAGTGAAGACAAAATACGGCGGGAGATCAATCTCCA 1047
|| | |||||||||||||||||||| | | | |||| |||||||||
Sbjct 1042 TTGGCAATAGAAGAATAATGCAGTC---G--G------T-------GAGAGCAATCTCCA 1083
Query 1048 ATTTGAAGTGTTTTGAAGACACTAGAACAGATGGTCGTTTGAAGGCTCTGTACCGCAAGA 1107
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1084 AGTTGAAGTGTTTTGAAGACACTAGAACAGATGGTCGTTTGAAGGCTCTCTACCGCAAGA 1143
Query 1108 GAAAATTATGTTATGGTTACAACCCATGGAAGCGTGAGACCGTTCATAAGAAGAGAAGAT 1167
||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1144 GAAAATTATGTTATGGTTACAACCCATGGAAGCGTGAGACCATTCATAGGAAGAGAAGAT 1203
Query 1168 TGTCTGCCAAAGGGTTGGTCGTTAATTATGATGGAGGGCTCAGTAGTGAAAGTGTTTCCA 1227
|||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1204 TGTCTGACAAAGGTTTGGTCGTAAATTATGATGGTGGGCTCAGTAGTGAAAGTGTTTCCA 1263
Query 1228 ATTCACCTGAAAAGGGAGAATCAGAAAATGGTGATTTCTCTGCTGCAAAAATAGGTCTTC 1287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 ATTCACCTGAAAAGGGAGAATCAGAAAATGGTGATTTCTCTGCTGCAAAAATAGGTCTTC 1323
Query 1288 TTTCGAAGGACTCCCGTGTAAAGTTCAGCATCAAGTCCCTTAGGATTCCGGAGCTTGTTG 1347
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 TTTCGAAAGACTCCCGTGTAAAGTTCAGCATCAAGTCCCTTAGGATTCCGGAGCTTGTAA 1383
Query 1348 TTGAAGTTCCAGAAACAGCAACAGTAGGCTTATTGAAGAGGACAGTGAAGGAGGCTGTTA 1407
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 1384 TTGAAGTTCCAGAAACAGCAACAGTAGGCTTACTGAAGAGGACGGTGAAGGAGGCGGTTA 1443
Query 1408 CTGCTTTACTCGGTGGTGGAATACGTATTGGGGTGTTAGTCCAAGGGAAGAAGGTTAGAG 1467
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1444 CTGCTTTACTCGGTGGTGGAATACGTATTGGGGTGTTAGTCCAAGGGAAAAAAGTTAGAG 1503
Query 1468 ATGACAACAACACACTATCACAGACTGGTCTTTCGTGTAGAGAAAATCTTGGCAACCTTG 1527
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 ATGACAACAACACTCTATCACAGACTGGTCTTTCGTGTAGAGAAAATCTTGGCAACCTTG 1563
Query 1528 GCTTCACATTGGAGCCTGGTCTGGAAACACTGCCTGTACCTCTTTGTTCTGAAACTCCTG 1587
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GCTTCACCTTAGAGCCTGGTTTGGAAACACTGCCTGTACCTCTTTGTTCTGAAACTCCTG 1623
Query 1588 TCGTTTCTGTGCCAACTGATTCTACAAAGTTGTCAGAAAGGTCCGCAGCTTCTCCCTCGT 1647
|| ||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1624 TCCTTTCTCTGCCAACTGACTCTACAAAGTTGTCAGAAAGGTCCGCAGCTTCTCCAGCGT 1683
Query 1648 TAGATACTAGAATTCCTATCCTTCTCCAAGATGAAGATCCCCTGATTAATTTGGGAAATA 1707
|||| ||| |||||||| ||| || ||||||||||||| | ||||||||||||||||||
Sbjct 1684 TAGAGACTGGAATTCCTCTCCCTCCCCAAGATGAAGATTACTTGATTAATTTGGGAAATA 1743
Query 1708 GTGTGGAGAACAATCATGAATTAGTCCCACATCCGAGTGACATATCAGCAGCTGATGAAC 1767
|||||||||||||| |||||||||||||||||| |||||||||| | ||||||||||||
Sbjct 1744 GTGTGGAGAACAATGATGAATTAGTCCCACATCTGAGTGACATA-C--CAGCTGATGAAC 1800
Query 1768 AACCTTCATCAGATTCAAGAGCGCTGGTTCCAGTTTCGGCCTTGGAATCCGAGGCTCTTG 1827
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1801 AACCTTCATCAGATTCAAGAGCGCTGGTTCCAGTTTTGGCCTTGGAATCCGACGCTCTTG 1860
Query 1828 CACTTGTTCCAGTTAACGAGAAACCTAAGCGTACAGAGCTTTCACAGCGCAGAACCAGGA 1887
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1861 CACTTGTTCCAGTTAACGAGAAACCTAAGCGTACAGAGCTTTCACAACGCAGAACCAGGA 1920
Query 1888 GACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTACGAGCAGTTGAAGAAGTTGGGACTG 1947
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1921 GACCATTCTCTGTTACAGAGGTAGAAGCTCTAGTAAGCGCAGTTGAAGAAGTTGGGACTG 1980
Query 1948 GAAGATGGCGTGATGTGAAGTTGCGTTCTTTTGAAAATGCAAGTCATCGAACCTATGTGG 2007
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1981 GAAGATGGCGTGATGTGAAGTTGCGTTCTTTTGAGAATGCAAGTCATCGAACCTATGTGG 2040
Query 2008 ACTTGAAGGACAAATGGAAAACGCTGGTTCACACAGCAAGTATATCACCACAGCAACGAA 2067
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2041 ACTTGAAGGACAAATGGAAAACGTTGGTTCACACAGCAAGTATATCACCACAGCAACGAA 2100
Query 2068 GAGGAGAACCAGTGCCTCAAGATCTGCTAGACAGAGTCTTAGGAGCACATAGGTTTTGGT 2127
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 2101 GAGGAGAACCAGTGCCTCAAGAACTGCTAGACAGAGTCTTAGGAGCACATAGGTACTGGA 2160
Query 2128 CACAGCACCAAATGAAACAGAACGGGAAACATCAGGTGGCTACAAGTACAACAATGGTGG 2187
||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 2161 CACAGCACCAAATGAAACAGAACGGGAAACATCAGGTGGCTACAA---CAA---TGGTGG 2214
Query 2188 TTGAATCAGGTTCGTCCGTGTAAAGAAGGAGAATGTTAATAACAATAACTTTCACTTGAC 2247
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2215 TTGAAGCAGGTTCGTCCATGTAAAGAAGGAGAATGGTAATAACAATAACTTTCACTTGAC 2274
Query 2248 GACTAAGGAACCAAAGTGGGCAACTGTACAAAGGCAAACAACAAAAGTACAGAACCATAC 2307
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 2275 GACTAAGGAACCAAAGTGGGCAACTGTACAAAGGGAAACAACAAAA-TACAGAAACATAC 2333
Query 2308 TTAATTTCTGGAAAGAAGA--C-At-ttttt-tttGT---AA-TCATAGCTGGTAGAAAC 2358
|||||||||| |||||||| | || ||||| ||| | || |||||||||||||||||
Sbjct 2334 TTAATTTCTGAAAAGAAGAGTCTATATTTTTATTTTTTTTAAATCATAGCTGGTAGAAAC 2393
Query 2359 TTGACGTTCCTTGGCACTTTTGGTTACTTTTATGGTACGTCTGTTCATTCCAAATTTCTA 2418
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2394 AAGACGTTCCTTGACACTTTTGGTTACTTTTATGGTAAGTCTGTTCATTCCAAATTTCTA 2453
Query 2419 GTTGATTTGATTATGTAAT 2437
||||||||||||||||||
Sbjct 2454 ATTGATTTGATTATGTAAT 2472
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121033513995
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5