BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488208
Length=1753
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13840.1 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468508-44... 2523 0.0
> AT5G13840.1 | Symbols: FZR3 | FIZZY-related 3 | chr5:4468508-4470991
REVERSE LENGTH=1900
Length=1900
Score = 2523 bits (1366), Expect = 0.0
Identities = 1561/1651 (95%), Gaps = 30/1651 (2%)
Strand=Plus/Plus
Query 46 TAATCAGATCCCGCTCCTATATACTATTATATAATCTCTCCCACCACCGA-AATTTGACC 104
|||||||||||||||||||| | |||||||||||||||||| |||| | | |||||||||
Sbjct 88 TAATCAGATCCCGCTCCTATTTCCTATTATATAATCTCTCCGACCATC-ATAATTTGACC 146
Query 105 GTTGGAGAACATTACT-C-TTT-GCAAAAGAA-GG-------aa-a-a-a-a-aaaGCTC 148
|||||||||||||||| | ||| ||||||||| || || | | | | |||||||
Sbjct 147 GTTGGAGAACATTACTACTTTTCGCAAAAGAAGGGAAAAAAAAAGAGAGAGATAAAGCTC 206
Query 149 TCTTTGATTCTTTTGCAATCTTCTCCT-CTCAATCTCTG-ACCAA--ACC-AACACTTCC 203
|||| ||||||||||||||||||| || || | | || ||| || | || ||
Sbjct 207 TCTTCGATTCTTTTGCAATCTTCT-CTCCT-ACGGT-TGTTTCAATCTCCGACCA-AACC 262
Query 204 AGTGATTTTGAATAGAACCCAGAAATGGCATCGCCACAGAGTACCAAAACCGGCTTGAAT 263
||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 263 -GTGCTTTCGAATAGAACCCAGAAATGGCATCGCCACAGAGTACCAAAACCGGTTTGAAT 321
Query 264 CTACCCGCACGGATGAACCAGACTTCGTTGCGTCTGGAGACGTTTTCGAGCTCATTTCGT 323
|| |||||| ||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct 322 CTTCCCGCAGGGATGAACCAGACTTCGTTGCGTTTAGAAACGTTTTCGAGCTCATTTCGT 381
Query 324 GGTATTTCGAGTTTATCCTCGCCGTCTAAATCTACTTGCAGCGACAGATTCATACCGTGC 383
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 382 GGGATTTCGAGTTTATCCTCGCCGTCTAAATCGACTTGCAGCGACAGATTCATACCGTGC 441
Query 384 AGATCTTCTTCGAGACTCCACGCTTTCGATCTGCAGGATAAGGAACCGACCACGCCGGTT 443
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 442 AGATCTTCTTCGAGACTCCACGCTTTCGATCTGCAGGATAAGGAACCGACTACCCCGGTT 501
Query 444 AAAGAGGGAGGGAACGAAGCCTACTCCAGACTTTTGAAATCTGAGCTTTTTGGATCTGAT 503
|||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 502 AAAGAGGGAGGGAATGAAGCCTATTCTAGACTTTTGAAATCTGAGCTTTTCGGATCTGAT 561
Query 504 TTCGCTTCTCCT-TGTTTGTCTCCTGCAGGTGGTCAAGGATCTGCTTCTTCTCCGATGAG 562
|| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 TTTGCTTCTCCTCT-TTTGTCTCCTGCAGGTGGTCAAGGATCTGCTTCTTCTCCGATGAG 620
Query 563 TCCATGTACTAACATGTTGAGATTCAAGACGGATCGTTCCAATTCAAGTCCTAGTTCGCC 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TCCATGTACTAACATGTTGAGATTCAAGACGGATCGTTCCAATTCAAGTCCTAGTTCGCC 680
Query 623 GTTTTCTCCTTCCATTCTCGGAAATGATAATGGTCTCTCCAGTGACTCGTCTCCGCCTCC 682
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 681 GTTTTCTCCTTCCATTCTCGGAAATGATAATGGTCACTCCAGTGACTCGTCTCCGCCTCC 740
Query 683 GAAACCGCCTCGCAAGGTTCCTAAAACACCTCATAAGGTCTTGGACGCTCCTTCCTTACA 742
||| || |||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 741 GAAGCCCCCTCGCAAGGTTCCTAAAACACCTCATAAGGTCTTGGATGCTCCTTCTTTACA 800
Query 743 AGATGACTTCTACTTGAATGTTGTGGACTGGAGCTCACAGAATGTTCTTGCGGTTGGGCT 802
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 801 AGATGACTTCTACTTGAATGTTGTGGACTGGAGTTCACAGAATGTTCTTGCCGTTGGGCT 860
Query 803 TGGTACTTGTGTCTATCTTTGGACTGCTTCTAATAGCAAAGTGAGTAAGTTATGCGACCT 862
|||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||| |||||
Sbjct 861 TGGTACTTGTGTTTATCTTTGGACGGCTTCCAATAGCAAAGTGACTAAGTTATGTGACCT 920
Query 863 AGGGCCTAATGACAGCGTGTGCTCGGTTCAGTGGACACGGGAAGGTTCATATATATCTAT 922
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 921 AGGGCCTAATGACAGTGTGTGCTCGGTTCAGTGGACACGGGAAGGTTCATATATATCTAT 980
Query 923 TGGTACAAGTCATGGTCAGGTTCAGGTTTGGGACGGAACACAGTGCAAGAGAGTCCGAAC 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TGGTACAAGTCATGGTCAGGTTCAGGTTTGGGACGGAACACAGTGCAAGAGAGTCCGAAC 1040
Query 983 CATGGGAGGTCATCAGACGAGAACTGGTGTCTTGGCATGGAACTCAAGAATCTTATCATC 1042
||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1041 CATGGGAGGTCATCAAACAAGAACTGGTGTCTTGGCATGGAACTCAAGGATCTTATCATC 1100
Query 1043 AGGGAGCAGAGACAGAAACATCCTTCAACATGATATCCGAGTCCAGAGCGATTATGTCAG 1102
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1101 AGGGAGCAGAGACAGAAACATCCTTCAGCATGATATCCGAGTCCAGAGCGATTTTGTCAG 1160
Query 1103 CAAACTCGTGGGGCACAAATCTGAAGTCTGCGGTCTGAAATGGTCTCACGATGATAGAGA 1162
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1161 CAAACTCGTGGGCCACAAATCTGAAGTCTGCGGTCTGAAATGGTCTCATGATGATAGAGA 1220
Query 1163 GCTTGCGTCTGGAGGCAATGATAATCAGTTATTGGTATGGAACAATCATTCACAGCAACC 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1221 GCTTGCGTCTGGAGGCAATGATAATCAGTTATTGGTATGGAACAATCATTCACAGCAACC 1280
Query 1223 TATTCTGAAGCTGACTGAGCATACAGCAGCGGTTAAGGCAATTACATGGTCTCCTCATCA 1282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1281 TATTCTGAAGCTGACTGAGCATACAGCAGCGGTTAAGGCAATTACATGGTCTCCTCATCA 1340
Query 1283 GAGCAGCCTCCTTGCTTCAGGAGGTGGAACCGCAGACAGATGCATTAGATTCTGGAACAC 1342
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 GAGCAGCCTCCTTGCTTCGGGAGGTGGAACCGCAGACAGATGCATTAGATTCTGGAACAC 1400
Query 1343 GACAAACGGACATCAGTTAAACAGCATCGACACTGGGAGCCAGGTCTGCAATCTGGCATG 1402
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1401 GACAAACGGAAATCAGTTAAACAGCATCGACACTGGGAGCCAGGTCTGCAATCTGGCGTG 1460
Query 1403 GAGCAAGAATGTTAACGAGATAGTGAGTACTCATGGCTACTCTCAAAACCAAATCATGCT 1462
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1461 GAGCAAGAATGTTAACGAGATAGTGAGTACTCATGGATACTCTCAAAACCAAATCATGCT 1520
Query 1463 CTGGAAGTACCCATCCATGTCAAAGGTTGCAACACTTACTGGCCACAGTATGAGAGTACT 1522
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1521 CTGGAAGTACCCATCCATGTCAAAGGTTGCAACACTTACGGGCCACAGTATGAGAGTACT 1580
Query 1523 TTACTTGGCTACGTCACCTGATGGCCAGACTATAGTGACCGGAGCAGGAGATGAGACCCT 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1581 TTACTTGGCTACGTCACCTGATGGCCAGACTATAGTGACCGGAGCAGGAGATGAGACCCT 1640
Query 1583 GCGGTTTTGGAACGTCTTCCCTTCAGTGAAAATGCAGACACCAGTGAAGGACACAGGTCT 1642
|||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1641 GCGGTTTTGGAACGTCTTTCCTTCAGTAAAAATGCAGACACCAGTGAAAGACACAGGTCT 1700
Query 1643 ATGGTCATTGGGGAGGACACAGATCCGATAA 1673
||||||||||||||||||||||||||||||
Sbjct 1701 CTGGTCATTGGGGAGGACACAGATCCGATAA 1731
Score = 73.1 bits (39), Expect = 8e-12
Identities = 51/56 (91%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 1 GCTAGGACCAAAGATCTGACCGTTGGAGCATGAACTCCACAAATC--TAATCAGAT 54
||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 10 GCTAGGACCCAAGATCTGACCGTTGGAGCATGAACTCCAGAAATCGATAAT-AGAT 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86696341215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5