BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488210
Length=1252
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13860.1 | Symbols: ELC-Like | ELCH-like | chr5:4473089-4474... 1897 0.0
AT3G12400.1 | Symbols: ELC, ATELC | Ubiquitin-conjugating enzym... 425 4e-118
> AT5G13860.1 | Symbols: ELC-Like | ELCH-like | chr5:4473089-4474402
REVERSE LENGTH=1314
Length=1314
Score = 1897 bits (1027), Expect = 0.0
Identities = 1146/1204 (95%), Gaps = 6/1204 (0%)
Strand=Plus/Plus
Query 4 TCGTCATCTGTCGTCGTCTTCAAGTAATCGGAATTTGACTTGCCAATGGCTCCTCCTCCG 63
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 40 TCGTCATCTGTCGTCGTCTTCAAGTAATCGGAGTTTGACTTGCTAATGGCTCCTCCTCCG 99
Query 64 GCGAAGATGCAAGAGATCCACCAATTCCTTTCCTCCGCACTCTCCCAACGTGGCCCTTCC 123
||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||
Sbjct 100 GCGAAGATGCAAGAGATCCACCAATTCCTCTCCTCCGCACTCACCCAGCGTGGCCCTTCC 159
Query 124 GCTCTCCCCTACGCCGAGACCACCAAGTCGCTAATCCGTCAACACCTCCTCAACCTAATC 183
||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 160 GCTCTTCCATACGCCGAGAACACCAAGTCGCTAATCCGTCAACACCTCCTCAACCTAATC 219
Query 184 TCTTCCTACACTTCCCTCGACCCCAAAACGGCGACGTTTACACACAACGATGGCCGATCC 243
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 220 TCTTCCTACACTTCCCTCGACCCCAAAACGGCAACGTTTACACACAACGATGGCCGATCC 279
Query 244 GTGATCCTCCTCCAAGCCGACGGTACAATCCCGATGCCTTTCCAAGGCGTCAACTACAAC 303
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 280 GTGATTCTCCTCCAAGCCGACGGTACAATCCCGATGCCTTTCCAAGGCGTCAGCTACAAC 339
Query 304 ATCCCCGTCGTCATCTGGCTCCTCGAATCTTACCCTCACTATCCTCCTTGCGTCTACGTG 363
||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 340 ATCCCCGTCGTGATCTGGCTCCTCGAATCTTACCCTCAGTATCCTCCTTGCGTTTACGTG 399
Query 364 AACCCTACGCGCGACATGATCATCAAGCGACCTCACACTAATGTCTCTCCTTCTGGACTC 423
|| ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct 400 AATCCTACACGCGACATGATCATCAAACGACCTCACTCTAATGTCTCTCCTTCTGGACTC 459
Query 424 GTCTCTCTTCCTTACCTTCAAAATTGGGTTTACCCTAGCTCCAATCTCGTAGATCTCGCC 483
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 460 GTCTCTCTTCCTTACCTCCAAAATTGGATTTACCCTAGCTCCAATCTCGTAGATCTCGCC 519
Query 484 TCTCATCTCAGCGCCGCCTTCTCCCGTGATCCGCCGCTTTACTCTCAACGCCGTCCTCCT 543
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 520 TCTCATCTCAGCGCCGCCTTCTCTCGTGATCCGCCGCTTTACTCTCAGCGCCGTCCTCCT 579
Query 544 CCGCAACCGTCTCCTTCCATCGGATCTGGATACTCGAGACCTCTTCATCCTCACCAGACG 603
||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||
Sbjct 580 CCGCAACCGTCTCCTTCGATCGGATCTGGATACTCGAGACCTCTTCCTCCTCGCCAGACG 639
Query 604 GATGATGCGGCGGAGGTTTATAAGAAGAACGCGATCAACAAGATTGTGGAGATGGTTCAT 663
||||||||||| ||||| |||||||||||||| ||||||| |||||| ||||||||||||
Sbjct 640 GATGATGCGGCAGAGGTATATAAGAAGAACGCTATCAACAGGATTGTTGAGATGGTTCAT 699
Query 664 GGTGATCTTGTATTGATGAGGAGTGCTAGAGAAGTGGAGACGGAAGGATTACTGAGTTTA 723
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 GGTGATATTGTATTGATGAGGAGTGCTAGAGAAGTGGAGACGGAAGGATTACTGAGTTTA 759
Query 724 CAATCTGGA-CTTAAGAGAAGAGAAGAGGAGATCAACAATGGTTTAAAGGAGATGGTGAA 782
|||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 760 CAATCT-GATCTTAAGAGAAGAGAAGAGGAGATCAACAATGGTTTTAAGGAGATGGTGAT 818
Query 783 TGAGAAAGAGACCTTAGAGCAGCAATTACAGGTTATTGCTATGAATACTGATGTTCTTGG 842
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 819 TGAGAAAGAGACCTTAGAGCAGCAACTACAGGTTATTGCTATGAATACTGATGTTCTTGG 878
Query 843 TTCTTGGATTAGGGAGAATCAAGGGAAAGCTAAGAATTTGCTAGTAGATTTGGATGTTGA 902
||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct 879 CTCTTGGATTAGGGAGAATCAAGGGAAAGCCAAGGATTTGCTAGTGGATTTGGATGTTGA 938
Query 903 TGATGCATTTGAATGCAGTGAGACATTGTCCAAACAGATGTTAGAGTGTACTGCACTGGA 962
|||| |||||||||||| ||| ||||||| || ||||||||||||||||||||| ||||
Sbjct 939 TGATTCATTTGAATGCATTGACTCATTGTCTAAGCAGATGTTAGAGTGTACTGCATTGGA 998
Query 963 TTTAGCCATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTCGAGATGGTTCGTTGTC 1022
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 999 TTTAGCTATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTAGAGATGGTTCGTTACC 1058
Query 1023 GTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTCTTCCACCGAGC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1059 GTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTCTTCCACCGAGC 1118
Query 1083 CACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCCATTGCAGCTAG 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCCATTGCAGCTAG 1178
Query 1143 GTTGCATTCGTGAAAACTTGGGCAA-GTATTTTT-GGTGATTACTATTTCTATTCGATTT 1200
||||||||||||| | ||| |||| | |||||| |||||||||||||||||||||||||
Sbjct 1179 GTTGCATTCGTGATA-CTTAAGCAAAG-ATTTTTTGGTGATTACTATTTCTATTCGATTT 1236
Query 1201 TTAT 1204
||||
Sbjct 1237 TTAT 1240
Score = 82.4 bits (44), Expect = 1e-14
Identities = 49/51 (96%), Gaps = 1/51 (2%)
Strand=Plus/Plus
Query 1202 TATACACCAGTGCATATACAAAGTTGAAATCGATCACGTTTTGGGTTTATC 1252
|||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1262 TATACACCAGTGCATATACAAAGTTG-AATTGATCACGTTTTGGGTTTATC 1311
> AT3G12400.1 | Symbols: ELC, ATELC | Ubiquitin-conjugating enzyme/RWD-like
protein | chr3:3944296-3945851 REVERSE LENGTH=1556
Length=1556
Score = 425 bits (230), Expect = 4e-118
Identities = 458/565 (81%), Gaps = 27/565 (5%)
Strand=Plus/Plus
Query 604 GATGATGCGGCGGAGGTTTAT-AAGAAG-AACGCGATCAACAAGATTGTGGAGATGGTTC 661
||||||||||||||||||| | ||| || || ||||| || ||||| |||||||||||||
Sbjct 704 GATGATGCGGCGGAGGTTT-TCAAG-AGAAATGCGATTAATAAGATGGTGGAGATGGTTC 761
Query 662 ATGGTGATCTT-GTATT-GATGAGGAGTGCTAGAGAAG-TGGAGACGGAAGGA-TTACTG 717
|| | ||| || || || ||||||||| || ||||||| || || | | |||| | |||
Sbjct 762 ATAGCGAT-TTGGT-TTCGATGAGGAGAGCCAGAGAAGCTGAAG-CAG-AGGAGCTGCTG 817
Query 718 AGTTTACAATCTGGACTTAAGAGAAGAGAAGAGGAGATCAACA-ATGGTTTAAAGGAGAT 776
|| || ||| |||| || ||||||||||| || ||| | || | | |||| ||| |||||
Sbjct 818 AGCTTGCAAGCTGGGCTGAAGAGAAGAGAGGATGAGCTTAATATAGGGTTGAAA-GAGAT 876
Query 777 GG-TGAATGAGAAAGAGAC-CTTAGAGCAGCAATTACAGGTTAT-TGCTATGAATACTGA 833
|| || | |||||||| || ||| || || ||||||||| |||| | | ||||| |||||
Sbjct 877 GGTTG-AGGAGAAAGAAACACTT-GAACAACAATTACAGATTATCT-CCATGAACACTGA 933
Query 834 TGTTCTTGGTTCTTGGATTAGGGAGAATCAAGGGAAAGCTAAGAATTTGCTAGTAGATTT 893
| |||| | || ||| |||| ||||| ||||| ||| | ||||| || |||| |||||
Sbjct 934 TATTCTAGACTCGTGGGTTAGAGAGAACCAAGGCAAAACCAAGAA-TT--TAGTTGATTT 990
Query 894 GGATGTTGATGATGCATTTGAATGCAGTGAGACATTGTCCAAACAGATGTTAGAGTGTAC 953
|||||| ||| |||| |||||||| |||| ||| | || || |||||||||||||||||
Sbjct 991 GGATGTGGATAATGCTTTTGAATGTGGTGACACACTCTCTAAGCAGATGTTAGAGTGTAC 1050
Query 954 TGCACTGGATTTAGCCATTGAAGATGTTGTTTATTCCATGGATAAATCGTTTCGAGATGG 1013
||| ||||||||||||||||||||| | |||||||| ||||||| ||||||| ||||||
Sbjct 1051 TGCTTTGGATTTAGCCATTGAAGATGCTATTTATTCCTTGGATAAGTCGTTTCAAGATGG 1110
Query 1014 TTCGTTG-T-CGTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGGGAGCAGTTC 1071
| |||| | | |||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1111 -T-GTTGTTCCCTTTGATCAGTATTTGAGGAATGTGAGGTTGTTGTCGAGAGAACAGTTC 1168
Query 1072 TTCCACCGAGCCACGGCTGAGAAAGTTAGGGAGATACAGATGGATGCTCAGGTTGCTTCC 1131
|||||||||||||||| | ||||| |||| | ||| ||||| | ||||||||| ||
Sbjct 1169 TTCCACCGAGCCACGGGTTCTAAAGTCAGGGCGGCACAAATGGAGGTTCAGGTTGCAGCC 1228
Query 1132 ATTGCAGCTAGGTTGCATTCGTGAA 1156
|| |||| |||||| ||||| ||||
Sbjct 1229 ATCGCAGGTAGGTTACATTCATGAA 1253
Score = 396 bits (214), Expect = 3e-109
Identities = 396/482 (82%), Gaps = 19/482 (4%)
Strand=Plus/Plus
Query 88 TTCCTTTCCTCCGCACTCTCCCAACGTGGCCCTTCCGCTCTCCCCTACGCCGAGACCACC 147
||||| ||||| || |||||||| || ||||| || | ||||||||| ||| ||| |
Sbjct 95 TTCCTCTCCTCTGCCCTCTCCCAGCGCGGCCCATCTTCAGTCCCCTACGAAGAGTCCAAC 154
Query 148 AAGTCGCTAATCCGTCAACACCTCCTCAACCTAATCTCTTCCTACACTTCCCTCGACCCC 207
|||| | | ||||| ||||| || || |||||||||||||| ||| ||||| | || |||
Sbjct 155 AAGTGGTTGATCCGGCAACATCTACTTAACCTAATCTCTTCTTACCCTTCCTTAGAGCCC 214
Query 208 AAAACGGCGA-CGTTTACACACAACGATGGCCGATCCGTGATCCTCCTCCAAGCCGACGG 266
|||||||| | |||||| ||||||||||| || ||||| | |||||| ||||| || ||
Sbjct 215 AAAACGGC-ATCGTTTATGCACAACGATGGTCGCTCCGTCAACCTCCTTCAAGCAGATGG 273
Query 267 TACAATCCCGATGCCTTTCCAAGGCGTCAACTACAACATCCCCGTCG-TCATCTGGCTCC 325
||| || ||||||||||| || || |||| ||| ||||| || || | | ||||||||||
Sbjct 274 TACGATTCCGATGCCTTTTCATGGAGTCACCTATAACATACCTGT-GATTATCTGGCTCC 332
Query 326 TCGAATCTTACCCTCACT-ATCCTCCTTGCGTCTACGTGAA-CCCTACGCGC-GACATGA 382
|||| || || |||| | |||||||||||||||| ||||| ||| || ||| || ||||
Sbjct 333 TCGAGTCATATCCTC-GTCATCCTCCTTGCGTCTATGTGAATCCC-AC-CGCTGATATGA 389
Query 383 TCATCAAGCGACCTCACACTA-ATGTCTCTCCTTCTGGACTCGTCTCTCTTCCTTACCTT 441
||||||||||||||||| | | ||||| |||||||||| ||||| |||||||| ||||||
Sbjct 390 TCATCAAGCGACCTCACGC-ACATGTCACTCCTTCTGGTCTCGTTTCTCTTCCGTACCTT 448
Query 442 CAAAATTGGGTTTACCCTAGCTCCAATCTCGTAGATCTCGCCTCTC-ATCTCAGCGCCGC 500
|| |||||||| |||||||||||||||||||||||||||| ||| | |||||||||| ||
Sbjct 449 CAGAATTGGGTCTACCCTAGCTCCAATCTCGTAGATCTCGTCTC-CGATCTCAGCGCTGC 507
Query 501 CTTCTCC-CGTGATCCGCCGCTTTACTCTCAACGCCGTCCTC--CT-CCGCAACCGTCTC 556
|| | | ||||||||||| ||||| |||| ||||||||||| | |||| ||||||||
Sbjct 508 TTT-TGCTCGTGATCCGCCTCTTTATTCTCGACGCCGTCCTCAGCCACCGCCACCGTCTC 566
Query 557 CT 558
||
Sbjct 567 CT 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61545868170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5