BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg488211
Length=1326
Score E
Sequences producing significant alignments: (Bits) Value
AT5G13870.1 | Symbols: EXGT-A4, XTH5 | xyloglucan endotransgluc... 1977 0.0
> AT5G13870.1 | Symbols: EXGT-A4, XTH5 | xyloglucan endotransglucosylase/hydrolase
5 | chr5:4474976-4477045 REVERSE LENGTH=1392
Length=1392
Score = 1977 bits (1070), Expect = 0.0
Identities = 1211/1279 (95%), Gaps = 9/1279 (1%)
Strand=Plus/Plus
Query 1 TTCTCCGGTCCTCATGCCTGCTGGAATCAGCTGGTCGGTTTGGATTCTAC-AGGGACACT 59
||||||||||||||||||||| |||||||||||||||||||||| ||| | | ||| | |
Sbjct 16 TTCTCCGGTCCTCATGCCTGCCGGAATCAGCTGGTCGGTTTGGACTCT-CAATGGAGAGT 74
Query 60 GTGAAAGCTTCCAAGCAGATATGATGCTATTTTGAGTCAAATAGTATTTCTTTATTATCT 119
||| ||||||||||||| ||||| || ||| | | |||||||||| ||||||||||||||
Sbjct 75 GTGGAAGCTTCCAAGCAAATATGGTGGTATCTGGTGTCAAATAGTGTTTCTTTATTATCT 134
Query 120 TCTGCCCACAGATCTTAAACGTAAAAGCATCCAAAGATGCATTAA-T-----TAACATGG 173
|||||||| |||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 135 TCTGCCCATAGATCTTAAACGTAAAAGCATCCAAAGATGCATTAATTAACGATAACATGG 194
Query 174 GGATGAGGTCCATGTGCCTCTGCAACACCTCTTCTGCAATCACATTCTGTTGCTTCCCTA 233
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 195 GGATGAGGTCCATGTGCCTCTGCAACACCTCTTATGCAATCACATTCTCTTGCTTCCCTA 254
Query 234 AGTTACTGCTGCCAACATTGAAAGAAACCCCAAAGTGCAGTGATTTTAATAATCAGATAT 293
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 255 AGTTACTGCTGCCAACATTGAAAGAAA-CACAAAGTGCAGTGATTTTAATAATCAAATAT 313
Query 294 TATTTTAAGACTTAAGAGCAAGCTGATTAATGGCTATATATAGAAATGTCCGTGCAGTGT 353
||| ||||||| |||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 314 TATGTTAAGACGTAAGAGCAAGCTGATTGATGGCTATAAATAGAAATGTCCGCATAGTGT 373
Query 354 TTGTTTGGTGTGATGAGAGTGAGAATGGGTCGTCTTTCATCAACTCTCTGCCTCACCTTT 413
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 374 TTGTTTGGTGTGATCAGAGTGAGAATGGGTCGTCTTTCATCAACTCTCTGCCTCACGTTT 433
Query 414 CTGGTTATGGCCAAAGTTGCATTTGGTGTACCTCCTAAAAAGTCCATTAATGTTCCATTT 473
||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 CTGATTTTGGCCACAGTTGCATTTGGTGTACCTCCTAAAAAGTCCATTAATGTTCCATTT 493
Query 474 GGAAGGAACTACTTCCCCACTTGGGCTTTTGATCACATTAAGTATCTCAACGGTGGTTCT 533
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 494 GGGAGGAACTACTTCCCCACTTGGGCTTTTGATCACATTAAGTATCTCAATGGTGGTTCT 553
Query 534 GAAGTGCATCTCGTCCTCGACAAGTACACTGGCACTGGCTTTCAGTCCAAAGGTTCCTAC 593
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 554 GAAGTGCATCTTGTCCTCGACAAGTACACTGGCACTGGCTTTCAGTCCAAAGGTTCCTAC 613
Query 594 TTGTTTGGCCACTTCAGTATGCACATAAAGATGGTTGCTGGTGACTCTGCCGGAACTGTG 653
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 614 TTGTTTGGCCACTTCAGTATGCACATAAAGATGGTTGCTGGTGACTCTGCTGGAACTGTG 673
Query 654 ACCGCCTTCTATTTGTCATCGCAGAACTCAGAACATGATGAGATAGACTTTGAATTTCTA 713
||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||
Sbjct 674 ACCGCCTTCTATTTGTCGTCCCAGAACTCAGAACATGATGAGATAGACTTTGAGTTTCTA 733
Query 714 GGGAACAGAACTGGCCAGCCTTACATTTTGCAGACAAACGTGTTTACAGGAGGCACTGGA 773
||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||
Sbjct 734 GGGAACAGAACTGGCCAGCCTTACATTTTGCAGACTAACGTGTTTACAGGAGGCGCCGGA 793
Query 774 AACCGTGAGCAGCGGATCAACCTCTGGTTTGATCCTTCCAAGGACTACCATTCCTATTCA 833
||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 794 AACCGTGAGCAACGAATCAACCTCTGGTTTGATCCTTCCAAGGACTATCATTCCTATTCA 853
Query 834 GTTCTCTGGAACATGTATCAGATTGTGTTCTTTGTGGATGATGTGCCGATAAGAGTGTTC 893
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 854 GTTCTCTGGAACATGTATCAGATTGTGTTCTTTGTGGATGATGTGCCGATACGAGTGTTC 913
Query 894 AAGAATAGCAAAGACATTGGGGTGAAGTTTCCGTTCAACCAGCCGATGAAGATATATTCG 953
||||||||||||||| |||||||||||||||| |||||||| || |||||||||||||||
Sbjct 914 AAGAATAGCAAAGACGTTGGGGTGAAGTTTCCATTCAACCAACCAATGAAGATATATTCG 973
Query 954 AGTCTGTGGAATGCAGACGACTGGGCCACAAGGGGAGGGTTAGAGAAGACCAACTGGGAA 1013
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 974 AGTCTGTGGAATGCAGACGACTGGGCCACAAGGGGAGGGTTGGAGAAGACCAACTGGGAA 1033
Query 1014 AAAGCTCCTTTCGTCGCGTCCTACAGAGGCTTCCACGTCGATGGATGTGAAGTTTCAGTG 1073
||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1034 AAAGCTCCTTTTGTCGCGTCCTACAGAGGCTTCCACGTCGATGGATGTGAAGCTTCAGTA 1093
Query 1074 AATGCTAAGTTCTGCGAGACCCAGGGAAAACGTTGGTGGGATCAGAAAGAGTTCCAGGAC 1133
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1094 AATGCTAAGTTCTGCGAGACGCAGGGAAAACGTTGGTGGGATCAGAAAGAGTTCCAGGAC 1153
Query 1134 TTGGACGCTAACCAGTACAAGCGTCTCAAATGGGTTCGTAAGAGATACACCATCTACAAT 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 TTGGACGCTAACCAGTACAAGCGTCTCAAATGGGTTCGTAAGAGATACACCATCTACAAC 1213
Query 1194 TACTGTACTGACCGCGTCCGATTTCCTGTGCCTCCTCCAGAGTGCCGCAGAGACCGCGAC 1253
|| || |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1214 TATTGCACTGACCGCGTCCGATTTCCCGTACCTCCTCCAGAGTGCCGCAGAGACCGCGAC 1273
Query 1254 ATATAGTGTTTTTTCAGAT 1272
|||||||| ||||||||||
Sbjct 1274 ATATAGTGATTTTTCAGAT 1292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65260708500
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5